Xiphophorus hellerii (green swordtail): 116713960
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Entry
116713960 CDS
T07363
Symbol
pdgfrb
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
xhe04510
Focal adhesion
xhe04518
Integrin signaling
xhe04540
Gap junction
xhe04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116713960 (pdgfrb)
04020 Calcium signaling pathway
116713960 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
116713960 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116713960 (pdgfrb)
04540 Gap junction
116713960 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
116713960 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116713960 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xhe04090
]
116713960 (pdgfrb)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
116713960 (pdgfrb)
Protein kinases [BR:
xhe01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
116713960 (pdgfrb)
CD molecules [BR:
xhe04090
]
Proteins
116713960 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Izumo-Ig
Haspin_kinase
DUF3619
Motif
Other DBs
NCBI-GeneID:
116713960
NCBI-ProteinID:
XP_032410129
LinkDB
All DBs
Position
23:17989792..18023433
Genome browser
AA seq
1102 aa
AA seq
DB search
MRRLIASVLHLMVALTALVHFCPEVRSLEITPDDKEFVLAQGSSLTLICSGSSHAKWALK
RDDSTYYLNQLDENMKSRYKIFELDTTSVAVNLTSVSWVHTGVYQCVDDISDEIKEVAVF
VPDPEVWFVKSTHGMVTKTSEESIVPCVATNPNITVILYEWDTNRPIKGHYVPSEGYRAQ
LEDRAYVCRGELNGEVKESQEFNVISIIVAEDINPYINSSKTVLKQGEPLTINCTVHGVE
LVYFSWDIPHTAVVEVEPQTYFSPKMHSCLTFPRTTVENSGNYVCHVQEMVAGVTATSSV
NITVLEHGFVEVKPAQWQNISAKLQENVELRVDIEAYPPPQVRWTKDGTTIRGDKAITVR
QDHEIRYVTVLTLVRVRTEHNGVYTVIISNGDDKKEIIFDLEVQVPAQIKDLTDHHFPGM
RDVVTCVAEGFPAPIIQWYSCDGMLKCSNRTAAWQPLKPQPEVVSIQTNVSYDQARKVSM
VRSQVIFHNPQQVTVRCEASNQPGDVSTRDVKLVSSTWFSKVAVLAAVLALVVIFILSII
ILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRENLVLGRTLGSGA
FGRVVEATAYGLTHSHSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGA
CTKHGPLYLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNQDSGCIISRGSTPLSQRKGYVS
FGSESDGGYMDMSKDEPSFYVPMQEQLDTIKYADIQPSPYESPYQQDLYQEQGGGRLDLV
IGDSPTLTYDDLLGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDI
MHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNE
IFYSALKRGYRMAKPAHASDEVYEIMKKCWDEKFEKRPEFSLLVHNVGNMLMDSYKKRYN
QVNENFLKSDHPAVARTKPRLSSPFPIANPAFGSPSPITQSFPGRHSQSPRPGDGGREAD
TQEVIPSYNEYIIPLPDLKPDDVFTEVPSESPASSLAVEEEADSTSQDTAETLPEEDRVE
NTSERDALLGSMGTPEVEDSFL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggctgatagcatctgtgctccacctgatggtcgctttaacggctttggtgcat
ttctgcccagaagtgcgcagcctggagatcacccctgatgacaaagagtttgtcctggct
caaggctcgtctctcaccctaatctgctccggctccagccacgcaaagtgggcgcttaag
agggacgattcaacttactacctgaaccagctagatgagaatatgaaatcaagatacaaa
atctttgaacttgatactacgtcggttgctgtgaacctaacaagtgtgagttgggtgcat
actggcgtgtatcagtgcgtcgatgatatttctgacgagataaaggaagtggcagtgttt
gtcccagatcctgaagtttggtttgtaaagagcacccacggcatggtgacgaagaccagt
gaagaaagcatcgtcccctgtgtggccaccaacccaaacatcactgtcatcctgtatgag
tgggacaccaacaggcccatcaaagggcattatgtaccgagtgaggggtacagggcgcag
ctggaggacagagcatatgtgtgccgtggagagctgaatggggaggtcaaagagtctcag
gagtttaacgtcatcagcattatagtggccgaagacatcaacccttacatcaacagttca
aagacggtcctgaagcagggcgagccgctgactataaactgcacggtgcacggagtggag
ctggtgtatttttcttgggatattccacacactgcggttgttgaggttgaaccacaaacg
tatttctccccgaagatgcactcctgcctgaccttccctcgcactacggtggagaacagc
ggaaactacgtgtgccacgtccaagaaatggtagcgggcgtcacagctacttcaagcgtc
aacatcaccgtgcttgaacacggttttgtggaggtgaaacctgctcagtggcaaaacatt
tcagccaagcttcaggagaacgtggagctgagagtggacattgaggcctaccctccccct
caggttcgctggaccaaagacgggaccaccatcaggggagacaaagctatcacagtcaga
caggatcatgaaataaggtatgtgaccgttctcacactggtgagggtgaggactgagcat
aatggcgtctacacggtcatcatttccaatggagacgacaaaaaggaaattatctttgac
ctggaagtccaagttcctgctcagattaaagacctgaccgaccaccatttcccagggatg
agagacgtggtgacctgcgtcgctgaagggtttccagctccgatcatacaatggtacagc
tgtgacggcatgctcaagtgtagcaacaggacagcagcatggcagccgctgaagccacaa
ccggaggtggtgagcatccaaaccaatgtcagctacgaccaggcgcgtaaagtcagcatg
gtgaggagccaggtgatcttccataatcctcagcaggtcacagttcgctgcgaggcctcc
aaccagcccggggacgtcagcacgagggacgtcaaacttgtgtccagcacgtggttctcc
aaggtggcagtgctggctgctgttctggccttagtggtcatttttattttgtcgataatc
atcctcatcgctgtatggaggaagaaacctcgctatgaaatcagatggaaggtgatagag
tctgtgagccaggatggacatgagtacatttatgtggaccccatccatctgccctatgac
ctggcctgggagatgcccagagaaaacctggtgctgggtcgcacgcttggatcaggagca
tttggcagggtggtcgaggcaactgcgtacggtctcacgcattcccactccagcacaaag
gtggcagtgaaaatgctgaaatccacagccaggaggagtgagactcaggccctgatgtcc
gagctgaagatcatgagtcacctgggacctcacctcaacattgttaacctgctcggagcc
tgcaccaaacatggccctctctacctggttactgagtactgtcgctatggtgacctagtg
gactacctgcataggaacaagcacaccttcctgcagtactacgctgagaagaaccaggac
agcggatgcatcatctccagaggaagtacccctctcagccagagaaaaggctatgtgtcc
ttcggaagtgagagcgacggaggatacatggacatgagcaaagatgagccctccttctac
gtgcctatgcaggagcagctggacacaattaaatatgcagacatccagccgtccccgtat
gaatccccctaccagcaggacctctaccaggaacaaggtgggggcagactggatctggtg
atcggcgattctcccaccctcacctacgacgatctcctaggcttcagttaccaggttgca
aagggaatggacttcctggcctcaaagaattgtgtccatcgtgacctggcagccaggaac
gtattgatctgtgagggcaagctggtgaagatctgtgactttggcctggccagagacatc
atgcatgattccaactacatctccaaaggcagcacattcctgcccctgaagtggatggca
ccggaaagcattttccacaatttgtacaccaccctgagcgacgtttggtcatatggcatt
cttctttgggaaattttcactctgggaggaactccttatcctgatttgcccatgaatgaa
atcttctacagtgctttgaagagaggctacaggatggccaagcctgctcacgcctctgac
gaagtgtatgagatcatgaagaagtgctgggatgagaaatttgagaagaggcccgagttt
tccctcctggtgcacaatgtgggaaacatgctgatggacagctataaaaagagatacaac
caagtgaatgaaaacttcctcaagagcgatcaccctgccgtggctcgcaccaaacctcgg
ctctcctctccatttccaattgccaacccagccttcggctctccctctccaatcactcag
tccttcccgggccgccacagccaaagcccgaggcctggagacggcgggcgagaggcagac
acacaggaagtcatcccttcatacaacgagtacatcattcctctcccagacctaaagcct
gacgacgttttcactgaagtgccgtcggaaagccctgcgagctctctggctgtggaggag
gaggctgactccacatctcaggacacggcggaaactcttccggaggaagaccgggtggag
aacacgagtgagagggacgcactgctgggctccatggggacgcctgaggtagaagacagt
ttcctgtag
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