Xiphophorus hellerii (green swordtail): 116718296 Help Entry 116718296         CDS       T07363                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04010   MAPK signaling pathway xhe04120   Ubiquitin mediated proteolysis xhe04140   Autophagy - animal xhe04144   Endocytosis xhe04620   Toll-like receptor signaling pathway xhe04621   NOD-like receptor signaling pathway xhe04622   RIG-I-like receptor signaling pathway xhe05132   Salmonella infection xhe05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:xhe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     116718296 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     116718296 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     116718296 (traf6)    04140 Autophagy - animal     116718296 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     116718296 (traf6)    04621 NOD-like receptor signaling pathway     116718296 (traf6)    04622 RIG-I-like receptor signaling pathway     116718296 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     116718296 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     116718296 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:xhe04131]     116718296 (traf6)    04121 Ubiquitin system [BR:xhe04121]     116718296 (traf6) Enzymes [BR:xhe01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      116718296 (traf6) Membrane trafficking [BR:xhe04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     116718296 (traf6) Ubiquitin system [BR:xhe04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     116718296 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX TRAF6_Z2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 TRAF3_RING RING_XB3-XBAT31 zf-TRAF_2 zf-rbx1 U-box zf-RING_11 BLI1 Motif Other DBs NCBI-GeneID:  116718296 NCBI-ProteinID:  XP_032415999 LinkDB All DBs Position 4:5315611..5324473 Genome browser AA seq 570 aa AA seqDB search MACCESNKGSLEEDSYDGPVGPLSECALLMQEKERESLLSPSESPGTLMNSSSSSLQNTA PLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDAGQRCPVDNEM LSEDQLFPDNFAKREILSLTVRCPNSGCTDKMELRHLENHLAVCQFATVPCPQCQQPIRK GYLEEHKTVECQRRPMSCPDCVASFVFEDKELHEQQCPFASVRCQYCEMDLIRDQMESHC DIDCPKAPIACNFSMFGCKERMQRHDLAQHMQEFTQMHMRYMAESLRGLSLNGTSPKPLR TLGPSILAEDIGAAAPAAACGGLRGAVSCSISSAAPQPTDEMQRIREMDGRLVKQDHQLR ELIILKETQAGQLAELRRRVSMLEETVKELEAQQCHGIFIWRLRGFSTLLRNQEAGMTVV EHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGAFDGQLTWPLQGTIRLAI LDQGPECQHHMEVMETKPDLQAFQKPVIARNPKGFGYVTFLHLQQLSQKAFLKDDTLLIR CEVTPRFDSTFHREGAAVQPRGPEASISKE NT seq 1713 nt NT seq  +upstreamnt  +downstreamnt atggcttgctgtgaaagcaataaggggagtttggaggaggacagctatgacggaccagtt ggacctctatccgaatgtgccttgttaatgcaggaaaaagaaagggaatcccttttaagc ccatcggagagtcctggcactttaatgaacagctcatctagtagtcttcagaacactgcc ccacttcagggttatgatgtggaatttgacccaccccttgagagtaagtatgagtgccca atctgcctgatggccttaagaaatgccattcaaacacggtgtggtcaccgattctgcaag agctgcattgagaagtctattcgtgatgcaggacagcggtgccctgtggacaatgaaatg ctgtcagaagaccaactgtttcctgataattttgccaaaagagagattctatcgctaact gttcgttgtccaaactctggctgcactgacaaaatggagctccgacatttagagaatcat ttggctgtgtgtcagtttgccactgtgccttgtccgcagtgccagcagcctataagaaag ggctacctagaggagcacaaaactgttgagtgccaaagaaggcccatgtcttgcccagac tgtgtggcatcctttgtttttgaggataaagagctacatgagcagcagtgcccatttgcc agcgtgaggtgccaatactgtgagatggatctgatcagagaccagatggaatcccattgt gatatagattgcccaaaagcccccattgcctgtaactttagcatgtttggctgtaaggag aggatgcagcgacatgacctggctcagcacatgcaagagttcacacagatgcacatgcgt tacatggcggagtccttgcgtggcctcagtctcaatggcacgtcgcccaaacctctcaga actctagggccgtccattttggccgaggatattggcgctgcagcaccagcggcagcctgc ggcgggctcagaggagctgtgagctgcagcatcagctccgccgcaccccagcccaccgat gagatgcagaggatcagagagatggatgggcgattggtgaagcaggatcaccagctgcgt gagctcatcatactgaaagagacacaagcagggcagcttgcggagctgcgtcgtagggtc tcaatgctggaggaaaccgtgaaggagctggaggcccagcagtgccacggcatcttcatc tggcgcctcagaggtttctctaccctcctgcgcaaccaagaagcaggcatgacagtggtc gagcacagccctggcttctacacaggccgtccaggctacaagttatgtctgcgcttacac ctgcagacgcccaacgccccacgctgctccaacttcatctccctttttgtccacactatg caaggagcttttgacgggcagctgacttggcctcttcaaggaacgatccggcttgccatc ttagaccagggacccgagtgtcagcatcacatggaggtcatggagacaaagccagacctg caagccttccagaaacctgtgattgcacgcaatcctaaaggatttggctacgtcactttt ttgcatctgcaacagctgagtcagaaagcttttttgaaagatgacactctgctgatccgc tgcgaggtgacgccacgctttgatagcacgtttcatcgggagggcgcagccgtgcagcca agaggacctgaagcatcgatttcaaaagaataa

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