Xiphophorus hellerii (green swordtail): 116719755
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Entry
116719755 CDS
T07363
Name
(RefSeq) guanine nucleotide exchange protein smcr8a-like isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116719755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116719755
Membrane trafficking [BR:
xhe04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
116719755
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
116719755
NCBI-ProteinID:
XP_032418298
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Position
5:32211051..32222900
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AA seq
880 aa
AA seq
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MIGSPDLLPFTGSGGFEEEGEEPEVHTLPEEFSVRLLPPHNPWRTAAQFHRDFILVAEFS
EQVGPKPVLTIPNDSKVIGSFDLNHFSVRIMSVDYQASGPGHTAPALPGPRLSFSEDSKV
ILGDSADDSFAYVHHLTLYDLEARGMVRPFCMAYVCSDRTKLMENFSELSECFSQASDSL
KTGNRQAFSSELQRKLQELEYRRRALLQDTHASTGAGGRADELEALEHLILNHRELLRQV
TSYPNRKLQQPDFLPYDTADLPPEPSSPCLPSSASCMSESLLKPLEELCNFYFLSLVKNQ
LSDTERRLRGDRSVLRTARVSQLLSRKVKLTNFLFELCCPVDAEEEEEEDEAERVLGSTV
GAVGGQSEKHGGELFSCVEEIQIKMEGGGGGRATPDPSAFTDVMGSVSSSDSIEVLGTEK
SYRSQRGAVVSDSRETRVGTTDVILQHAAGDAGLRRLRAPARRANSEDSIEVLSTTESIV
PDDLSAITEEEAEHHTLTNGFEEEEESEADCKPDEVLKEERMKNTATAGDESGESAGRKE
LLEEIMFNVPDKDNSLTEKSNEVHKDKMNKLVQAGDAVESRQKKSRPVLDLHVKMAPKSV
GAEGALRTPPCAPLRLLSVDEFSDCTSFTSSSEPPSPTTVNLTSTCVDKKRRRRRAGLRA
LRFIKQLSFSQHAIFCLLIGRPLVVIGGDEQLVRKLVDGLRLFLPAPGADGSAVMSCLAT
PLQLTDLLTWRLIGIHRSSSSASSSILQSLTQLSRYIALLDLDQKTLRCPSYAGSLVGFL
ANPHTGIGRGLTYLLHLESCLTALANRVLLQTFTAASQLHRAIAEEKDFQQAPQLCSSEN
DFRVMHFLTDLITQRHTRHGPPPFRFSYSSVQLHRNTYPT
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgattggctcaccggacctgctgcccttcaccggcagcggggggtttgaggaggaagga
gaggagccggaggttcacactctgcctgaggagttctctgtccgccttttgccgcctcac
aacccctggagaacagcagcccagtttcaccgggactttatactggtggctgaattctca
gagcaggttggtccaaagcctgtcttaacaataccaaatgattcgaaggtcatcggctcg
tttgacctcaaccacttctccgtccgcattatgtctgtggactaccaggcgtccggcccg
ggtcacacagcccctgctctgcctggaccccgcctcagtttcagcgaggactccaaggta
atcctgggagactccgcagacgactcgtttgcgtacgttcatcacctgaccctgtacgac
ctggaggctcgggggatggtgcggcctttctgcatggcctacgtctgttcggaccggacc
aagctgatggagaacttctctgagctgtccgagtgtttttctcaggcctctgacagtttg
aagacgggaaacaggcaagcgttctcctctgaactgcagagaaagttgcaggagctcgag
tacagacggagggccctgctgcaggacacacacgcctccacaggagcaggaggcagagct
gatgagctggaagctttagagcatctgatcctgaaccacagagagctccttcgccaggtc
acatcctacccaaacaggaagctccagcagcctgacttcctgccctacgacacggctgac
ctgccgcctgagccgtcctctccctgccttccctcctctgcctcctgcatgtctgagtcg
cttctgaagccactggaggagctctgcaacttctacttcctgtccctggtgaaaaaccag
ctgtcagacacagagcggcgtctgcgtggcgacaggagcgtcctgcgaactgctcgcgtc
tcacagctactgtccaggaaggtgaaacttacaaacttcctgtttgagctgtgctgccct
gtggatgctgaggaggaagaggaggaggatgaagcagagcgggtcttggggagcaccgtg
ggagctgtgggaggtcaatcagaaaagcatggtggggagttgttctcctgtgtggaagaa
atacagataaagatggaaggagggggaggcgggagagcgacccctgaccccagcgcgttc
acagacgtgatgggcagcgtgagcagcagcgacagcatcgaggttctcgggacggagaag
tcgtaccggagtcaacgcggggccgttgtgtccgacagcagagaaacccgtgtcgggacg
acagacgtgattctccagcatgcagcaggagacgcaggccttcggcgcctgcgggcccct
gccaggcgtgccaacagcgaggacagcatcgaggttctcagcacgactgagtccatcgtc
cctgacgacctgtccgccatcacagaggaagaggcggagcatcacactctgaccaatgga
tttgaggaagaggaagagtcagaggctgactgtaagcctgacgaagtcctcaaggaggag
aggatgaagaacactgctactgcaggggacgaaagtggagaatctgctggaagaaaagaa
cttttggaggaaataatgttcaatgtaccagacaaagacaattcactcacagagaagagt
aatgaagtccataaagacaaaatgaataaactggtccaagctggagatgcagtggagtcg
aggcagaagaagtcgaggccggtgttagacctccatgtaaaaatggctccgaaaagcgtc
ggggcggagggagctctgcgcacgccgccctgcgctcctctgaggctgctcagcgtggac
gaattctccgactgcaccagcttcaccagcagctcagagccaccgtctcccaccacagtc
aacctcaccagcacatgtgtggacaagaaaaggaggaggaggagggctggcctgcgagcc
ctacggttcatcaagcagctctccttctcccagcatgccatcttctgtctgctgattggc
cggccgctggtcgtcatcggtggagacgagcagctggtgaggaagctggtggacggcttg
aggctcttcctgccagctcctggtgctgacgggagcgccgtgatgtcatgtttggccacg
cccctccagctgactgacctgctcacctggaggctcataggaatacacagatcatcttcc
agtgcatcatcttccatccttcagtctctgactcagttgagtcgttacatcgctctgctg
gacctggatcagaagacgctgcgctgtccttcatatgccggatccctggtcggcttccta
gccaaccctcacaccggcatcggccgcggcctcacctacctgctgcacctggagagctgc
ctgactgcgctggccaaccgggtgctgctgcagaccttcaccgctgcttcccagcttcac
agagccatcgccgaggaaaaggacttccagcaagcaccacaactctgcagcagtgaaaat
gattttcgagtgatgcactttctgactgacctgatcacgcagcgccacaccagacatgga
ccgccgcctttcaggttttcctacagctctgtgcagcttcacaggaacacatatccaaca
taa
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