Xiphophorus hellerii (green swordtail): 116720221
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Entry
116720221 CDS
T07363
Name
(RefSeq) slit homolog 1 protein-like isoform X1
KO
K06838
slit 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116720221
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Axon guidance molecules
116720221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_9
LRR_1
LRRNT
LRR_14
LRRCT
EGF_TEN
hEGF
EGF_Teneurin
EGF_DL_JAG
EGF_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116720221
NCBI-ProteinID:
XP_032419243
LinkDB
All DBs
Position
5:6990454..7051770
Genome browser
AA seq
1582 aa
AA seq
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MPARRRKDGAGSAAGLWTMLAWAVLVGPGGAEGCPAPCSCLGNTVDCHGRGIHSVPKNIP
RATERLDLNENNLTVITKTDFSGLKHLRVLHLMENKISSIERGAFDELKELERLRLNRNR
LSQLPELLFQKNEALSRLDLSENAIQAIPRRAFRGATDIKNLQLDKNHITCIEEGAFRAL
RSLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNALRCDCHLAWLSPWLRQRSALGLYT
QCSSPPALRGLNLAELRKSDFACSGHSGSAFVQPCSLASGSCPPMCSCSNNIVNCRGRGL
TAIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLHRIDLSNNQISEIAPDAFHGLRALN
SLVLYGNKITELPSGVFDGLVSLELLLLNANKIHCIRHAAFKDLENLALLSLYDNKIQSL
AMGTFSSLHSIQTLHLAQNPFVCDCHVKWLADFLGSNPIETSGARCASPRRLANKRIAQI
KSHKFRCSAKEQYHIPGEYVFYLALILQSQKQQETFASCCLHPGTEDRRLSYECNSKPVC
PAKCRCEANVVDCSNLRLTKFPEHLPPSTEELRLNNNDLSMLEATGAFKGLSHLKKINLS
NNKILEIEDGAFEGASSVGELHLTANHLESVRGSMFKGMEGLRMLMLRNNRISCIHNSSF
TGLTNVRLLSLYDNQLTTILPGAFDTLPNLSTLNLLANPFNCDCHLSWFGAWLRSRRIVT
GNPRCQSPAFLRGIPLQDVAAPDFRCEDGSVLEDRSCVAGPQCPSQCSCMDTVVRCSNKH
LQALPRGLPRNITELYLDGNQFTSVPKELATFKYLQLVDLSNNKINSLSNDSFSNMSQLT
TLILSYNSLRCIPPLALAGLRSLRLLSLHGNDISELQQGIFSDLASLSHLAIGANPLYCD
CRLLWLSDWVKSGYKEPGIARCAGPQGLEGKLLLTTPADKFQCLGPVDTSVQAKCTPCVS
SPCQNQGTCQIHQTQQYTCACKSGFTGKHCETPIDACVSNPCTNGGSCLRDEQTGGFSCA
CAFGFHGTFCEVNMDDCEDHGCDNGATCVDGVGNYTCLCPPNYRGLLCEEEDDVCSPGRN
PCQHQSTCISSPTGPRCVCIPGWVGPDCGIDYNECADHLCQNSAQCVDHLDGYSCDCLRG
FSGEFCEVTDLQQTPCQMAKCQNGAPCNDKLGTAICQCPPGFEGQSCEKLVSVNFVDRDS
YVELQDVKNWPQSNITLQVSTAEDNGILLYNGDHEPIAVELHQGHVRVTYDPGNQPATAI
YSSETVNDGNFHTVELVTFNQMVNLSVDGGEPTTLDSQGRGQPLTRETPLYVGGMPEEVI
PTSRGLSSQSLNTSSFHGCIRNLYINHELQDFTRSQMKPGVVPGCQPCRRLYCLHGICQP
NSAQGPQCHCQPGWTGQHCDQPITVGLSGGDVVTMANALNPCEGNKCVKGVCMVLDAQTY
RCECEKGFRGALCNLQEEPAGSCQRLQCLHGRCQKTEDGESCVCEQGYTGESCDTETPCR
GEPVRDYHRLQRGSVLCQTSKPFSWVDCRGHCRAEAERGAAAVSCCAPLRVRRRRITFEC
DDGTSFTQDVEKPVECGCKKCV
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgaggagaagaaaggatggagcagggtcggcggcgggtctgtggacgatgctg
gcgtgggcggtcctggtgggtccgggaggcgctgaagggtgtccggctccctgcagctgc
ctggggaacacggtggactgccacggccggggaatccactctgtccccaaaaacattccc
agagcgactgagaggctcgatctgaacgagaacaacctgacggtcataaccaagacagat
ttctctggtcttaaacacctcagagttcttcacctgatggagaacaagatcagtagcatt
gaaagaggagcctttgatgagctgaaggagctggaaagactgcgtcttaacagaaatcgt
ctcagccagcttccagagctgctctttcagaagaacgaagctctgtctcgactggatttg
agtgaaaatgccatccaggccatcccaaggcgagcgttcagaggagccacagacatcaaa
aaccttcagctggataaaaaccacatcacctgtattgaggagggagcgttcagagctctg
agatccttggaagtgctcacactgaacaacaacaacatcagcagcatcccagtctccagt
ttcaaccacatgccgaaactgcgaaccttccgactccactctaatgctctgcgctgtgat
tgtcacctggcctggctgtcgccatggctacggcagcggtctgcgctgggcctctacacg
cagtgcagttcccctccggctctgcgggggctcaacctcgcagagctgcgcaagagtgac
ttcgcctgctcaggccacagcggcagcgccttcgttcagccgtgcagtttggcgtccggt
tcttgtcctccgatgtgttcctgtagcaacaacattgtgaactgcagaggaaggggcctc
accgccatacctgcccacctgccggaggccatgacagagattcgtctggagcagaatggc
atcaagtcagttcctcctggtgcgttcacttcctacaagaagctccaccgcatagacctg
agcaacaatcagatatctgagattgctcctgatgcatttcacggcctccgagcgctcaat
tcgctcgttttgtatgggaataaaatcactgagctgcccagcggagtatttgatggcttg
gtttctctggagctgctattgctgaatgcaaataaaatccactgtatacggcacgcagcg
ttcaaagacctggaaaacctggctcttctttctctgtacgacaataagatccaaagtctg
gctatgggaacctttagttcactgcacagcatccagacactccacctggcccagaacccg
ttcgtttgtgactgtcatgtgaagtggctggcggacttcctgggttcaaaccccatcgag
accagcggggctcgctgcgccagccctcgtcggctcgccaacaagcgcatcgctcagatc
aagagccacaagttcagatgctccgccaaggagcagtaccacatcccaggtgaatatgtt
ttttatttagctttaattttgcagtcacagaaacaacaggagacatttgcatcctgttgt
ttgcatccaggcactgaagaccgacgtctgagctacgagtgtaacagtaagcctgtatgt
cctgctaaatgtcgctgtgaggccaatgtggtggactgctccaatctgcgcctcaccaag
ttcccagagcacctgccgccctccaccgaagagctgcgtcttaacaacaatgacctgtcc
atgctagaggccaccggcgccttcaagggtctttctcatctaaagaaaattaacctgagc
aacaacaagattttagagattgaggacggtgcgtttgagggcgcctcgtcagtgggggaa
cttcacctcacagccaaccacctggagtctgtgcgagggagcatgtttaaaggcatggag
ggtctgcgcatgctgatgctgaggaacaacaggatcagctgcatccataacagcagcttc
acagggctgaccaacgtcaggctgctctccctctacgacaaccagctcaccaccatcctg
cctggagccttcgacactctgcccaacctctccactctaaacctgctggccaaccctttc
aactgcgactgccacctgtcctggttcggagcgtggctccggagccgccggatcgtgacg
gggaaccctcggtgccagagcccggcttttctgcgaggcattcctctgcaggacgtagcg
gcccctgatttccgctgcgaggatggttctgtgctggaggacaggagctgcgtagcgggg
ccccagtgtcccagtcagtgttcctgtatggacacagtggttcgctgcagcaacaaacac
ctgcaggctctgcccaggggattaccacgtaacatcaccgaactgtacctggatggaaac
cagttcaccagcgttcctaaagagttagccaccttcaagtacctgcagcttgtagatctg
agcaacaataaaatcaactcgctgtccaacgactccttctcaaatatgagccaactcaca
actctgatcctcagctacaactcgttacgatgtatccctcctctagctctggctggcctg
cgctccctaagactgctctctctccatggcaacgacatctctgagctgcagcagggaatc
ttcagtgacctggcctccctgtctcacctagcaattggagccaaccctctgtactgtgac
tgccggctgctctggctgtcagactgggtgaagagcggctataaggagccgggcatcgcg
cgctgcgccggaccccagggcctggagggcaaactgctgctcaccacacctgctgacaag
ttccagtgtctgggtccagtggacacttctgttcaggccaaatgcactccatgcgtttcc
tccccttgccagaaccagggaacctgccaaatccaccaaacccagcagtacacctgcgcc
tgcaagtcgggttttacgggtaaacactgcgagactccaatcgatgcttgtgtcagcaac
ccctgcaccaatggaggaagctgcctgagagacgagcagacaggaggcttcagctgcgca
tgtgcattcggtttccatggcacattttgcgaggtcaacatggatgactgcgaggatcac
ggatgtgacaatggcgccacctgtgtcgatggagttggcaactacacctgcttgtgtcct
cctaactacagaggtctgctttgtgaagaggaggatgatgtttgttctccaggtagaaat
ccttgtcagcatcagtccacctgcatcagcagtcctacaggccccaggtgtgtgtgtatc
cctggctgggtgggaccagactgcggcatcgactacaacgagtgcgcagatcacctctgt
cagaactcagctcagtgcgtcgaccatctggacggttacagctgcgactgcctgcgggga
ttcagtggcgagttttgtgaggtgacagatcttcagcagacaccctgccagatggccaag
tgtcagaatggcgctccctgtaacgacaagttggggaccgcaatctgtcagtgtccgccc
ggctttgagggccagagttgcgagaagctggtcagcgtcaacttcgtggacagagattct
tacgtcgaacttcaggatgtgaaaaactggcctcagtccaacatcacattgcaggtgtca
actgcggaagataatggcatcttgctgtataatggtgatcatgagccgattgctgtagag
ctccatcagggtcacgtaagggtcacctatgaccctgggaaccaacctgccaccgctatt
tacagctctgagacggtaaacgatggtaatttccacacggttgagctggtgacctttaat
cagatggtgaacctgtctgtggatggaggagagccaacaactctggacagccaaggccgc
ggccagccgctgactagagagacgcctctttacgtgggaggtatgcccgaggaggttata
ccgacttctcgaggcctctcctctcagagcctcaacacgtccagtttccacggctgcatc
aggaacctctacataaaccacgagctgcaggactttacccgcagccaaatgaagccaggg
gttgtaccgggctgccaaccctgccgcagactttactgcctgcatggcatatgccaaccc
aacagtgcacagggcccccagtgccactgccagccaggttggacaggtcaacactgtgac
cagccaatcactgtaggccttagtggaggggacgtcgtcaccatggcgaatgctctcaac
ccatgtgagggaaacaagtgtgtgaagggcgtctgcatggtgctggatgctcaaacctac
cgctgtgaatgtgagaagggattcagaggagcgctgtgcaacctccaggaggagcccgcc
ggctcgtgccagaggctgcagtgtcttcacggccggtgtcaaaagacggaggatggagag
agctgtgtgtgcgagcagggatacactggagagagctgcgatacagagaccccatgtcga
ggtgagccggtcagagactaccaccggctgcagcgcggctccgttctctgccagacatca
aaaccgttctcctgggtcgactgtcggggtcactgccgggctgaagccgagcggggagcc
gccgccgtttcctgctgcgcccctctgagggtccgtcggcggcggatcaccttcgaatgc
gatgatgggacgtcgtttacgcaggatgtggagaagcctgtggaatgtggctgcaagaaa
tgtgtgtaa
DBGET
integrated database retrieval system
