KEGG   Xiphophorus hellerii (green swordtail): 116720224
Entry
116720224         CDS       T07363                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    116720224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xhe03000]
    116720224
   04121 Ubiquitin system [BR:xhe04121]
    116720224
   03036 Chromosome and associated proteins [BR:xhe03036]
    116720224
Enzymes [BR:xhe01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     116720224
Transcription factors [BR:xhe03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    116720224
Ubiquitin system [BR:xhe04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     116720224
Chromosome and associated proteins [BR:xhe03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    116720224
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     116720224
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JmjC DUF7885 JHD F-box Cupin_8 PHD
Other DBs
NCBI-GeneID: 116720224
NCBI-ProteinID: XP_032419251
LinkDB
Position
5:complement(6385365..6406198)
AA seq 1213 aa
MDDSKPRFSKRLRAGTRRRYHDDGISDEEIDGRRMFNLEEKVSSEKFSSDRIVRMEGKDF
TYEFVQKGGLRDPILFEKPEGLGIKMPEPDFSVNDVKTFVGSRRMIDVMDVSTQKGTEMS
MAQWTRYYETPVSQREKLYNVISLEFSHTKLENLVKRPTTVELIDWVDNMWPRHLKERQR
DSTNSINDMQYPKVQKYCLMSVQGCYTDFHIDFGGTSVWYHILKGRKVFWLIPPTDPSLE
LYENWVLSGKQGDIFLGDRVSDCQRIELKPGCTFIIPSGWIHAVYTPVDSIVFGGNFLHS
FNIPMQLNICNIEDRTRVPVKFRCPFFYEMCWYVLERYVFSLTKTSYFTAEFQKYSLGTE
EDSDKNEESEKSPSKVHLTPLELEGLWSLISKLEALPSSKRSVPAGIQNASTLMTHFKAL
LKEHANDNPKLSYTGKPIVKWPPRPSWYQPPPPPPPQPAPRPKPPSATSMQRPQKPSSSM
SSLRRRRVRCKRCEACMRAECGDCNFCRDMKKFGGPGKLKQTCVLRQCLSPGLPLSAVCE
ICKEPNQEETGDASLTLMECSSCSQIVHPACLTVQGDGVVNKDLPSCWECPKCVQGITDR
ECKGDRGDSLKRKSSSLLDARIAKIYRRQFHSQEGDDSGSDDDDHVSHRRRMGHSSRRSF
GASRRGLSRGGLSHKGNRGGFVSGGSMSVLRLKRGMGMKEVGRRGRVRLRGGSRMQRRGD
DSEESDDDEDDDEDDDDDDDDYDEDECDSEEEKEYLRHKHRRRRRDYDEDDDSEGQEFDP
EEEEVDTAEDDEMKGEDDEEDGRWDSDPEPPVLLVSDLNDDLLSGSYLTVTLQQPHKAKT
QSGSIVPKLEAAMGLRSTGAAGGQQGFIQRKAAHSKPSRARGSDPADSVTPRGPGRPRIR
GNQGDKSRRNYSPSSSEEDQAAASAASLPSSLLSLPSFKDAGSDRGGEKEVWVSVFSYLN
RAHLLACMTVCKAWYKWSCDKRLWSHIDVSRCSPLSNQALAGIIKRHPTSLDLSWTPLAM
KQLNCLLTRLPGLRELRLTGLPWSCLSALVSPTLPQLQLLDLRWCEGIKEAQIKEIITPP
DLESSRSRLRNMVTLRLSGLDVSESTLRLLQRHMPQLEALDLAHCKDITDSCITLLAAAG
THTRNNLSEITLSGCNQLTDGCLPYLKRFSSLTLLDLRGCKGISRRACDAFISDLSHIAL
YCMMEEKLIQRLD
NT seq 3642 nt   +upstreamnt  +downstreamnt
atggatgattcaaagcctcggttcagcaaaaggctgcgagccggtactcgaaggcgttac
catgacgatgggatctcagatgaggagattgatgggagaaggatgttcaacttggaggag
aaagtcagcagcgaaaagttcagttctgatcgaatcgtccgcatggaaggaaaagatttt
acatacgagttcgtccagaaaggtggcctgagagacccgatcctgtttgagaagcctgaa
ggccttggaatcaagatgccagaacctgatttcagtgtcaacgatgtcaagacgtttgtt
ggtagcagacgcatgatagacgtcatggatgtgagcacccagaaggggacagagatgtcc
atggcccagtggacgcgttattatgagactccggtgtctcagagagagaaactctataat
gttataagtcttgagttcagccacaccaaactggagaatttggttaaaagaccaaccaca
gtggagctcatagactgggtggacaacatgtggcctcgtcatttaaaagagaggcagagg
gattcaaccaactccatcaatgacatgcagtatccaaaagtccagaaatattgcctgatg
agtgttcagggttgctacacagactttcacatcgactttggcgggacatcagtctggtac
cacattctcaaagggaggaaggttttctggctgatccctccgacggatccaagcctggag
ctgtatgagaactgggttctgtctgggaagcagggggacattttcctgggagatcgagtg
tctgactgtcagaggatcgaactgaagccgggctgtacgttcatcataccctcaggctgg
attcatgcggtttacactcctgtggattcgattgtatttggaggcaacttcctgcacagc
ttcaacatccccatgcagctaaacatctgcaacattgaggacagaactcgggttcctgtg
aagtttcgctgcccgttcttttacgagatgtgctggtacgtgttggagcgctacgtcttc
agtctgacaaagacgtcctacttcaccgctgagtttcagaaatactcactgggcacagag
gaggattctgataagaacgaagagtctgaaaagtctccatccaaagtccatttgactcca
ctggagctggagggtctctggagtttgatcagcaaactggaggcgctgccgtcgagcaaa
aggagcgtccctgccgggatccagaatgcttcaactctcatgacacacttcaaggcttta
ctgaaggaacatgctaatgacaaccctaaactgtcctacactggaaaaccgattgtgaag
tggccacccaggccttcgtggtatcagccgcctcctccgcctccaccgcaaccagctcct
cgtcctaaaccgccctcagcgacctccatgcaacgtccgcagaaaccctcctcctccatg
tcctccctgaggcgccgcagagtcagatgtaagcgctgtgaggcgtgtatgagagcagag
tgtggagactgtaacttctgcagagacatgaaaaagtttggaggacctgggaaactcaag
cagacctgcgtgctgcggcagtgcctctcaccgggcctcccgctgtctgcagtgtgtgaa
atctgcaaggagccgaaccaggaggaaaccggagacgcttccctcactctgatggagtgc
tccagctgctctcagattgtccatcctgcctgcctcacagttcagggcgacggcgtcgtg
aataaagacctgcccagctgctgggagtgtccaaagtgcgtccagggcatcaccgatcga
gagtgtaaaggtgacagaggcgattcattgaagaggaaatcttcatcgcttctcgatgct
cgaattgctaaaatttacagacggcagttccacagccaggagggcgacgactcggggagt
gatgacgacgatcacgtgtctcacagaagaagaatgggccactcgtccagaaggtcgttt
ggcgccagcaggaggggtctgtcgcggggcggcttgtcccacaaggggaaccgaggcggg
tttgtgtcgggcggctccatgtcggtcctcaggctgaagcgagggatgggaatgaaggag
gtagggcgcagagggcgggtccggctccgcggaggatccaggatgcaacgcaggggagac
gactccgaagagtcggacgacgacgaagacgacgacgaggacgacgacgatgacgacgac
gattacgacgaggacgagtgcgacagcgaggaagagaaggaatatctgcgccacaaacac
cggagacgcaggagggactacgacgaagatgatgacagcgaggggcaggagtttgacccc
gaggaagaggaggtggacacggcagaggacgacgagatgaaaggggaggacgacgaggag
gacggacgctgggattcggacccggaaccgccggtgctgctggtgtccgatctgaacgac
gacctgctgagtggatcctacctgacggtcacgctgcagcagccgcacaaggccaagaca
cagtcaggctccatcgttccaaagctggaagcggccatggggttaaggtcgactggagct
gcaggaggtcagcagggcttcatccagagaaaggcggctcattccaaaccgtccagggcc
cgaggttctgatcctgctgactctgtaaccccgagaggaccgggcaggccacgtatacga
ggaaaccaaggagacaaaagcaggagaaattactcgccgtcttcctcagaggaagatcag
gctgctgcttctgccgcctccctcccatcgtctctactgtccctgccgtcctttaaggat
gcaggaagtgatcggggaggggagaaggaggtctgggtgtccgtcttcagctacttgaac
agagcccatctgctggcctgcatgactgtctgtaaagcctggtacaagtggagctgtgac
aaacgcctgtggagtcacatcgatgtgagtcgctgcagcccgctcagtaaccaggcgctg
gcaggcatcattaaacgccacccgacctctctggacttatcctggacgccgctggccatg
aaacaactcaactgccttctcaccagactcccaggtttgagggaactgaggctgactggt
ctgccctggtcgtgtctgtctgctctggtctctcccactctgccccagttgcagctgctg
gatctgcgctggtgtgaaggcattaaagaagcccagattaaagagatcatcaccccacct
gacttggagtcgtcccgcagcaggctcaggaacatggtgacgctgcgtctgtccggtctg
gatgtgagcgagtcgacactgaggctgctgcagcgccacatgccccagctggaggcactg
gacctggctcactgcaaggacataacagactcttgcatcaccctgctggcagctgctggg
actcacacccgcaacaatctcagcgagatcacgctctctggttgcaaccagctgacggac
ggctgcctgccctacctgaagcgtttctcctctctgactctgctggacctccgaggctgt
aagggaatcagcagacgtgcctgcgacgctttcatctcagatttgtcccacatcgccctc
tactgtatgatggaggagaagctcatccaacgcctggactaa

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