Xiphophorus hellerii (green swordtail): 116723357
Help
Entry
116723357 CDS
T07363
Name
(RefSeq) transient receptor potential cation channel subfamily M member 2-like isoform X1
KO
K04977
transient receptor potential cation channel subfamily M member 2 [EC:
3.6.1.13
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
116723357
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116723357
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.13 ADP-ribose diphosphatase
116723357
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116723357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
GapR_DNA-bd
DUF16
CLZ
Motif
Other DBs
NCBI-GeneID:
116723357
NCBI-ProteinID:
XP_032424078
LinkDB
All DBs
Position
7:complement(19991983..20011275)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKGDEIQSQFFLATKTAREHLSISPSFQRLAFTSWIKANISKKECSFFQRDPRKEQLCLC
GYSKTDHTDEAIKPEDFTGETWDKGKHIHKAPTDAFGDISFGGLGQKTSKYVRVSADTEA
EVLYTLLTQQWRLSPPNLLISVTGGANNFYLKPHLQKTFRRGLIKVAQTTGAWILTGGTH
SGVMMHVGQAVREYALSNTMQGQVVAIGVATWGVIHNRDKLVHEEGCFPANYVIDTQGQG
ALACLDNNHSHFLLVDDGTSGRYLVETELRAKLEKHISCRNLGNKVSSMTIPVVCVALDG
GPGTLDTLYKAMLSGTPCIILEGSGRIADVIAQVFGKPVSQITITLIRQQMMESFGQEYK
KFEEHEIIEFTKKIQDIIGMSHLLTIFKASEDDQGGVDLDVAILKALLKASKTDESRGGE
SWKRQLELAITWNRVDLAKTEIFTEQSMWKSNDLHWAMTLALVGNKPEFVSLLLENGLCL
RDFLKDDNTLCELYKQLPNCFFLDKLAKRVNLASSSRNQALGQRAHVLAGAKISLTHVSD
EVRHLLGKFTQHIYPSSAKTYHLDMSTEDISSSVSKDQTMMQDLLRQNRAEAQRDPGSDL
FLWAIIQNNKELSEIAWDQCGDCMSGALAASKILKKMAKESIDADEPQEMLELAKHYENH
AIGVFSECYNSDKERAQKLLVRISCFWGKTTCLRLALEANDKNFVALSGVQDLLTQIWCG
ELSVENPVWRVLVCMVFFPLIYTRFVVFRKQNVEPPLGCWSRLVGLYSAPQVKFYGNIIS
YFAFLFLFAVVLMVDFQSTPSIVELVLYFWLFSLVCEEIRQLFYDPDGFGFRKKAKRYIH
EMWNILDVISIVLFCLGLAFRLTTELFYAGKILLCIDFVVFCLRLMAIFTISRILGPKII
IVRKMMMDMFFFMFLLSIWVVAYGVAKQGILIHNDNRLDWIIRGAIYEPYLIIFGSFPEN
IDNAAFDINSCSMNGTDPLKPKCPVLNENQMPVFPEWLTIIMLCVYLLFANILLLNLLIA
IFNYTFEEVHDNTDSIWKFQRYELIKEYYSRPAAPPPFIIFSHLYLFIRKMVLFKAPISS
TEFKKQLPQTEEEELLSWEALMKDRHLLSARQEQSQSMERRILDTSQKVTTLTERMERLE
EQVTQSNKSLQWIVDSLKSQGFSAKEIQPQASTIPDESSNSLRTPEKEDGFHEKSHQLQY
PDSFPVPEEKVSFSSFMPTYCSSEDGNDHAGRSGPEGLDNYRNPGGRTGIKGRGALSHLG
PNLNLDLVVTRWRDSSRSVLEFLAVLNQNLRSLALPGGPVDSVDHLPGNLKGILGDKLFE
ALDAKVSEGTKVSEGYVDDCRNTDNAWVETTVLNIHLDGTSQVMVDINNMVISGDSCLQW
QEVSSRIRLSPNQRRSLQQVAELHNRKF
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaagggagatgagattcagtcacagttttttctggcaaccaaaacagcacgtgaacat
ctgtccatctctccttctttccagcgacttgcttttacctcatggatcaaggcgaacatc
tcaaaaaaggaatgctccttttttcagagggatcccaggaaagagcaactatgtctttgt
ggatactcaaagactgaccacactgatgaagccatcaagccagaggacttcaccggggaa
acttgggacaaaggaaaacatatccacaaagctccaacagatgcttttggagacatcagc
tttggtggtttggggcaaaagacaagcaagtatgtacgagtgtcggcagacaccgaagct
gaggtgctctacacgttattgactcaacaatggagactttcgcctccaaatttgctcata
tctgtgactggaggagccaataacttctacctgaagccccacctgcagaagacttttcgc
agagggcttatcaaagttgcacagactacaggtgcatggatcctcactggcggtacccac
tctggtgtgatgatgcatgtgggacaggctgtgagggagtacgccctgagtaacaccatg
caggggcaagtagtggctattggagtggcaacatggggagtaattcacaacagggataaa
ttggtacatgaagaaggttgcttcccagctaattatgtgattgacacacaaggtcagggt
gctctggcctgtcttgataacaatcattcccacttcctgctggttgatgatggaaccagt
ggacgctatcttgtggagactgagctgcgtgcaaaactagagaaacacatctcatgcaga
aatcttggaaacaaagttagttctatgaccatcccagtggtttgtgtggcattggatgga
ggaccaggcacactcgataccctctataaagccatgctcagtggcacaccatgcataatc
ctggagggctctgggagaatagcagatgttattgctcaggtgtttggaaaaccggtcagc
cagatcaccatcaccctcatccgacagcagatgatggagtcttttggtcaagagtataaa
aagtttgaagaacatgagattatagagtttacaaaaaagattcaggacatcatcgggatg
tctcatttgctgacaatattcaaagcaagcgaggacgatcaggggggagtggatttggat
gtggccatcctaaaagctcttctcaaagcttcaaagactgatgaatcacgaggaggtgag
tcctggaagaggcagctggagctggctatcacctggaatcgagtggacttagctaagact
gagattttcactgagcaaagcatgtggaagtccaacgacctccattgggccatgacttta
gccctggttggcaacaagcctgagtttgtgagtcttctcctggagaatggtttgtgtctg
agggacttcctgaaggatgacaacaccctttgtgagctctacaaacagctccccaactgc
ttcttcttggacaagttggccaagagggtgaaccttgccagcagcagcagaaatcaggca
ctgggccaaagggctcatgttctggcaggagcaaagatctcactgactcatgtctctgat
gaagtgcgccacctgctgggaaaattcacacagcacatctatccttcatctgccaagaca
taccatcttgacatgtccacagaggacatctcatcatctgtatctaaagatcagacaatg
atgcaggacctgttgaggcagaacagagctgaagcccagagggatccaggcagtgacctt
ttcctttgggcaattatccagaacaacaaggagctgtctgaaattgcctgggatcagtgt
ggagactgcatgtctggtgctctggctgccagcaagatcctgaagaaaatggcaaaggag
tcaattgatgcagacgagcctcaagaaatgctggagctcgcaaagcactatgaaaatcat
gcgattggtgtgttcagcgagtgctacaatagtgacaaggaacgtgcccagaagctgctg
gttcgaatctcatgcttttggggcaagacaacgtgtctgaggctggcacttgaggccaat
gataaaaactttgtggctctgtcaggtgttcaggatcttcttactcagatctggtgtggt
gagctttcagttgaaaatcctgtttggagggtgctggtctgtatggtcttcttccctctg
atctacacaagatttgtggttttcaggaagcagaatgtggagccgcctctgggctgctgg
tccagactggttggactgtacagcgctcctcaagtcaagttttatggaaacatcatctca
tactttgccttcctgttcctctttgctgtggttctgatggtcgacttccagagtacacca
tccatagtagagctggtgctctacttctggttgttctctctggtgtgtgaagagatcaga
cagctgttttatgatcctgatggttttggatttcgtaagaaagccaagagatacattcat
gagatgtggaacattttggatgtcatctccattgtgctgttctgtctgggtcttgcattc
aggctgacaactgagttgttttacgcaggtaaaatcctcctgtgcatcgactttgtggtc
ttctgcctccgtcttatggcaattttcaccatcagtcgaatactgggacctaaaatcatc
atagtcaggaaaatgatgatggacatgttcttcttcatgtttctgctgagcatctgggtt
gtggcgtacggtgtggccaaacaaggcatcctcatccataatgacaatcgactggactgg
atcatccgcggggctatttacgagccatacctcattatatttggaagtttccctgaaaat
attgacaacgctgcatttgatataaattcatgcagcatgaatggtacggatcccctgaag
cccaaatgtcctgtgctgaatgaaaaccaaatgccggtcttccctgagtggctcaccatc
atcatgctctgtgtttacttgctctttgccaacatattgctccttaacctcctcatagcc
atctttaactacacatttgaggaggtccatgacaacacggatagtatctggaagtttcaa
agatacgagctgatcaaagagtactatagccgcccagctgccccacctcctttcatcatc
ttcagtcatctctacctcttcatcagaaaaatggtgctgttcaaggctccgatctcatct
actgagttcaagaagcagcttcctcagacagaagaagaggagctattgtcctgggaagct
ttgatgaaggacagacacctgctgtctgcacggcaggagcagagccagagcatggagaga
cgcattctggatacatctcaaaaggttaccaccttaactgaacggatggagagactagaa
gaacaggtcacccagtcaaacaaatcactgcagtggattgttgacagtctgaaatctcag
ggtttttctgcaaaagaaattcaaccacaggcttcaactataccagatgaatcctccaac
tctttgaggacaccagaaaaagaagacggcttccacgagaagtcccatcagcttcaatac
ccagacagcttccctgttccagaggaaaaagtcagtttcagctcattcatgccgacctat
tgcagttctgaagatggaaatgaccatgcaggcagatctggaccagaaggcttagataat
tacagaaacccaggagggaggacgggcatcaagggaagaggcgcactcagccatcttggt
ccaaatttgaacctggatctcgtggttacacggtggcgagacagttcgaggtctgtgctg
gagttcttggctgttttgaaccagaaccttagatctttagctttgcctgggggtcctgtt
gactctgtggatcacctgcctggaaatctaaagggaattctgggagataagctgtttgaa
gccctagatgcaaaagtgtcagagggaacaaaggtgtctgagggctatgtggacgactgc
aggaacacagacaatgcctgggtggaaacaactgtcttaaacattcacctggacggaaca
agccaagtgatggtggacattaacaacatggttataagcggtgacagctgcctccagtgg
caggaggtgagcagcagaatcagactcagcccaaaccaaagacgctcgctgcagcaggtg
gcggagctgcacaacaggaagttctga
DBGET
integrated database retrieval system
