Xiphophorus hellerii (green swordtail): 116724978
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Entry
116724978 CDS
T07363
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04137
Mitophagy - animal
xhe04141
Protein processing in endoplasmic reticulum
xhe04210
Apoptosis
xhe04217
Necroptosis
xhe04621
NOD-like receptor signaling pathway
xhe04622
RIG-I-like receptor signaling pathway
xhe04920
Adipocytokine signaling pathway
xhe05132
Salmonella infection
xhe05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116724978
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116724978
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116724978
09143 Cell growth and death
04210 Apoptosis
116724978
04217 Necroptosis
116724978
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
116724978
04622 RIG-I-like receptor signaling pathway
116724978
09152 Endocrine system
04920 Adipocytokine signaling pathway
116724978
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116724978
09171 Infectious disease: bacterial
05132 Salmonella infection
116724978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116724978
04121 Ubiquitin system [BR:
xhe04121
]
116724978
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116724978
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116724978
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
116724978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
Sina_ZnF
zf-C3HC4_3
zf-RING_6
zf-RING_2
TRAFD1-XIAF1_ZnF
ATG16
Motif
Other DBs
NCBI-GeneID:
116724978
NCBI-ProteinID:
XP_032426685
LinkDB
All DBs
Position
8:16579167..16591423
Genome browser
AA seq
516 aa
AA seq
DB search
MARISLDSQNSLPGIPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKLLTSA
GPKPCEACRQEEIYEEPMSILNSNEAFPDNAAGREIASLPARCLNQGCSWTGSIKEYEAQ
HEGRCEYERVQCEACQASILLKDKDRHNERECEARTLNCKYCKVTFNFKDIKAHDEICLK
FPLQCKDCGKKKIPREKFSDHMKSCVKSKSACPFSEVGCKTVIENGKLSDHEHSSTMEHL
RLLLPMVLTMTHPRSEALGSGELQEDSGLGLYRAPEEGDGAAAAAQPVDLEKKVIALENI
VCVLNREVERSSLTLEAFAHQHRLDQEKIENLSNRVRQLERTVTMRDLQLSETEQLVREL
QNCTYDGIFVWKINDFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGT
HLSLFFVVMKGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDISSTSFQRPISEMNI
ASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcatctctttggactctcaaaactctttaccaggaattcctttgagtgtgctg
tctgtgcccatggagaataagtacaaatgtcagcagtgtctccaggtcctgaggaaacct
gtccaggctcagtgtggccaccgcttctgtgtgcactgcttcaagctgctcaccagcgct
ggtccaaagccttgtgaagcctgccgccaagaggagatctatgaggagcccatgtccatc
ctgaacagtaatgaggcgtttccagacaacgcagccgggcgagaaatagcgagtctgcct
gccaggtgtttgaaccagggctgcagctggactggatctataaaagagtacgaggctcaa
catgaaggccgctgtgaatacgaacgggtgcagtgcgaggcctgccaggcctccatcctc
ctcaaggacaaggacagacacaacgagagagaatgcgaggcgagaacgctcaactgcaaa
tactgcaaagttacattcaactttaaggacattaaggcccacgatgagatctgtctcaag
tttcccttacaatgtaaagattgcggcaagaagaagatccccagagaaaagttcagtgac
cacatgaaatcctgtgtcaagtcgaagagcgcctgtccattcagcgaagtgggctgtaaa
actgtgatagagaacgggaagctgagcgaccatgagcacagcagcaccatggagcatctg
cgtctgctgctgccgatggtgctgacgatgacccatccgcgaagtgaagccctcggatcc
ggggagctgcaggaggactcgggtctgggtctgtacagagctcctgaggagggagacgga
gctgcagccgccgcacagcctgtagacctggaaaaaaaagtaattgctttagaaaacatt
gtgtgtgtcctgaaccgggaagtggagcgcagttcgctcaccctggaggctttcgcccac
cagcatcgactagaccaggagaaaattgaaaacctgtcgaacagagtgcggcagctcgag
cgaacggtgaccatgagagacttgcagctgtcggagaccgagcagctggtgcgcgagctt
cagaactgcacctacgacgggatattcgtctggaaaatcaacgacttctccaggcgcagg
caggacgccgtggccggccgaacgcctgccatgttctcacccgcattttactccagcaaa
tacggctacaaaatgtgtctcaggctttatctgaacggcgacgggaccggacgggggacg
cacctctccctgttctttgtggtcatgaaaggaaagtgcgacgctctgctaaagtggccc
ttcagtcaaaaggtgactctgatgctcctggatcagaacaacagggagcacatcatcgac
gctttccgacccgacatctcctccacctccttccagcggccgatcagcgagatgaacatc
gccagcggctgcccgctcttctgtccgctggctaagctggccggcaagagcccatatctg
agagatgatacgatatttatcaaagcaatcgtagacctcacaggcttgtga
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