Xiphophorus hellerii (green swordtail): 116726713
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Entry
116726713 CDS
T07363
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
xhe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116726713 (brca1)
09124 Replication and repair
03440 Homologous recombination
116726713 (brca1)
03460 Fanconi anemia pathway
116726713 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116726713 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116726713 (brca1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116726713 (brca1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116726713 (brca1)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116726713 (brca1)
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116726713 (brca1)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116726713 (brca1)
Multi subunit type E3
BRCC complex
116726713 (brca1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116726713 (brca1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116726713 (brca1)
BRCA1-A complex
116726713 (brca1)
BRCA1-B complex
116726713 (brca1)
BRCA1-C complex
116726713 (brca1)
BRCA complex
116726713 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
116726713 (brca1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-Nse
RING_XB3-XBAT31
RTT107_BRCT_5
zf-RING_5
zf-MIZ
zf-ANAPC11
zf-rbx1
zf-RING_10
zf-RING_4
PTCB-BRCT
TRAF3_RING
zf-PARP
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
116726713
NCBI-ProteinID:
XP_032429435
LinkDB
All DBs
Position
10:6402500..6448316
Genome browser
AA seq
1377 aa
AA seq
DB search
MSCGKTEADELYVDAYKLSENKPFKITMTTPKATDVKKGISVLWETLQCPICLDLMSAPV
STKCDHQFCKFCITKLLDNSKQNRANCPVCKFKITKRSLQESPGFQRLVAGLQEMIQAYE
HDTCTNYFTGLPQQRKNTKNTETSKDAWDLSFGDPSGIEQNNKGTEHRNDSPQSCSSTVA
AQNGFAQLMGLEDSASVTAENEGLDSGLGDIPPTSDKKMSDNLEPETANVGKNATDASKN
KRLKRKPEKASNCLDSTQEEPGQQNVRKSSRKKQKNDLEHNKILEQKKKKSLEKVAEWLL
KVPAEEELELEKPLHSEDDSDSSSSSSIRDVEPQNVELNPKRKHRGKAIEEQVFGVIYKR
RGSKVTEPLTAKEIETCKRFSKLKKKNNVRLCEERQTVENDTGSDFFKELEQMAVEEKVE
ETVEKLNQKVSDKYKGEHEVPVADFIQPETTAPTRRTCKSLHQPEGDLQEQTQLKPKGTD
KKSDCRKEKNSKLSRKKPTKVAKPLVLVEVQDRETSPKPSERVKEVEVQIETYPSSEEQT
TPVMKSARKSRRLQLFVDEVHGSHKKTTNKVTATKTDEVAKKQSDETMDATPSKSRNLMK
EAKRNRCVTEEDIGVIENVEKRERMSLSQAEAEVPEAQTLAKPECTVSVVPNSTSPTDPS
IVGPTLESEKQENNRPPGSQQETFANVEEYEDGKNDSELDTEQLLQSFKASKRKSFLLGD
PSAKRSRSLDVENAEGSQHNCSSAELSENINQVSKSTCSDVISPSNSPSKIRKPDQALLD
ASNPDGNCPSRSNVGSGLSPNKVAKCDRDSPLSVVPQVVDSGLRFIAVEQEAANASQGNY
LTEIPDSISKCPSDNKTETIFVGESSLTLDQEVKEANGSGEVSTQSSIQTNQKKKRKTQR
LESSSESSSSSKEELPTLAQIFGTSDHPQAEIKHQGEIGEANRLEGVAEEPLGRPAGSLT
PDQLDSSQASVDLFGTPEEGDAPENCVGVCFESSQFSSEVLVTQQKIEMQKELVRLEKLM
ALVSEVLQGKEGSPAAETNQGCENRGPELDEQDQVQSSDRTDILDAETKAPDDKVAERGG
FSGTAVQDLTHAESTVKDTKTPNSISATKTAKACDSPPDCQEDKENNSPPKEKSKAKLVL
VSSGLGPNEQIMVKKFAKRVGGRIVSQVTPEVTHIVMRTDDQLVCERTLKYFLGIAGRKW
VVSFQWISECFKEKKLLKESSFEVRGDVVNGPNHQGPLRARTAGDSNLLMKGYKICLKGP
FPDMSTDEMEWMVELCGATVVKDPLVLDGEQKSHQIVIVQPRSDSSSSSCYSGEYFLKTK
PRLHLHVDSARIVTPSCVTPTHFQHLTTRQERRQWLHNSRFNPRLSRNKCKRLYFKT
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgagttgcgggaaaactgaagcggatgagctttatgttgacgcctacaaactgtcagaa
aacaagccttttaaaatcactatgacgaccccaaaagccaccgatgtcaaaaagggaatc
tcagtcctctgggaaactcttcaatgtcccatttgcctggatttaatgtctgcaccggtt
tctactaaatgtgatcaccagttttgcaaattttgtattactaagcttttggacaactcc
aaacaaaacagagccaactgcccagtgtgtaaattcaagataacaaaaaggagcctgcag
gagagccctgggtttcagaggcttgttgcaggacttcaggagatgatacaagcatatgaa
catgacacctgcacaaactactttactggactgccacagcaaagaaagaacactaaaaat
acagaaacaagtaaagatgcatgggatttatcatttggagacccatctggaattgaacag
aacaataagggaactgaacaccgaaatgattctccacagtcctgctcctcaactgtagca
gctcagaatgggtttgctcagcttatgggacttgaagactctgcatctgtaacagcagaa
aacgaaggcctggatagcggcctgggtgacatcccaccaacatctgacaagaaaatgtca
gataacttggagccagaaactgcaaatgttggaaaaaacgcaacggatgcgtctaaaaac
aaaaggctgaagcgcaaaccggagaaggcctctaactgtttagattcaactcaagaggaa
cctggtcaacagaatgtccgaaagtcctctagaaagaaacagaaaaatgatttggagcac
aacaagattcttgagcagaaaaagaagaaaagtttggagaaagtcgctgagtggctcctc
aaagttccagccgaagaagagctggaactagagaaacccctccacagcgaagacgattcg
gatagcagttcgtcttcgtcgatccgggacgttgagccgcaaaacgttgaattgaatcct
aagagaaaacatcgtggcaaagccattgaagagcaggtttttggcgtcatctacaagcga
agaggaagcaaagttaccgagccgctaacggctaaagaaatagaaacttgtaaaagattt
tcaaaactgaagaagaaaaacaatgtccgcctttgtgaagagcgacaaacagtagaaaat
gacactggcagtgacttttttaaagaattggaacagatggcggtcgaggaaaaggttgag
gaaactgtggagaagttgaaccagaaagtaagcgacaaatataagggggaacacgaggtt
cctgttgctgatttcatacaaccggaaactacagcaccaacgagaaggacttgcaaaagt
ctgcatcaacctgagggtgatttacaagagcagactcagttgaaaccaaaaggtaccgac
aagaaaagtgattgtcggaaagaaaaaaattcaaagttaagcagaaagaaaccaactaag
gtggcaaaacctcttgtgttagtcgaagttcaggacagggaaacgagtcctaaacccagt
gaaagagttaaagaagtcgaagttcaaatagagacttatcccagcagcgaggaacagaca
actccagtcatgaagagcgccagaaaaagcagaaggcttcagctttttgttgacgaggtt
catggaagtcacaagaaaacaaccaataaagttactgcaactaaaacagacgaagtcgct
aaaaagcaatctgatgaaacaatggatgcaactccatctaaaagtagaaaccttatgaag
gaagctaaaagaaacagatgtgttactgaggaggatatcggagtgatagaaaatgtagaa
aagagagaaagaatgtctttgtcacaagctgaagcagaggtacccgaagcacaaacgcta
gctaaacctgaatgtactgtctctgtggtcccgaactccacaagtccaaccgatccatcc
atcgtaggtccgacgcttgaaagtgagaagcaggagaataatcgcccacctggctctcag
caggagacatttgctaacgttgaagagtacgaggatggcaagaacgacagtgaactggac
acagagcaacttctccaaagcttcaaagcttccaaacggaaatctttccttcttggagac
cccagcgcgaagagaagtcgcagtttggatgtggaaaacgctgaagggagccaacataac
tgttcaagcgctgaactatcagaaaatataaaccaggtttcaaaatcgacttgtagtgac
gtgatttccccttccaactcgcccagtaagattagaaaaccagatcaagctctactggac
gcttccaatcctgatgggaactgtccatccaggagcaacgtcggcagcggtctcagtcca
aacaaagtggcaaagtgtgacagagacagtcctctgtctgtcgtccctcaggtcgtggac
tctggcctccgcttcatagctgttgaacaggaagcagcaaacgcttcccagggcaactac
ctgacggagatcccagacagcatttcaaaatgtccttcggataacaaaaccgagacaatt
tttgttggagagtcttctttaaccctggaccaagaggtcaaggaagccaacggcagcgga
gaagtcagcactcaatcctccatccagaccaaccagaagaagaagaggaagactcagagg
ctggagtcttcatccgagtccagcagctcatctaaagaggagttaccgactttggcgcag
atctttggaacatcagaccatcctcaagctgagattaaacatcagggagaaatcggcgaa
gctaacagattggagggagttgctgaagaaccactgggtcgtccagctggaagtctgacc
ccagatcagctcgactccagccaggcatccgtcgacttgttcggcacaccggaggaaggt
gacgcccctgaaaactgcgtcggcgtttgctttgaatcgtcacaattctcaagcgaagtt
cttgttactcagcaaaagatagaaatgcagaaggagctggtgaggctggagaagctgatg
gctctcgtgtcagaggtgcttcaggggaaagaaggcagtcctgctgcagaaaccaatcag
ggctgtgaaaacaggggtccagaactggatgagcaggatcaagtccagagttcagacagg
acggatattttagatgcagaaaccaaagcacctgatgataaagtggcagagcgtggtggc
ttttcaggaaccgctgttcaagacttgactcatgcagaatcgactgtaaaagacacaaaa
acccctaattcaatttctgcaaccaaaacggcgaaagcttgtgattcacctccagattgc
caagaagacaaagaaaacaacagccctccaaaagaaaaatctaaagctaaacttgttctg
gtgtcgtccggattgggcccgaatgagcagataatggtgaaaaagtttgccaagagagtc
ggcggtcgcatcgtttcccaggtgacaccagaggtgacgcatatcgtaatgcgcacagat
gatcagctggtctgcgaacgcacactgaaatacttccttggcattgcgggtcggaaatgg
gtcgtcagcttccagtggatttctgaatgcttcaaggaaaagaaactgttgaaagagagt
tcgtttgaagtgagaggcgatgtggtgaacggaccgaaccaccaggggccgttaagagcc
cgcaccgcaggagacagtaatctgctcatgaagggatacaagatctgcctcaaggggccg
tttccagacatgtcaacagatgagatggagtggatggtggagctgtgtggcgctactgta
gttaaagacccacttgtccttgacggcgaacagaagtcccaccagatcgttattgttcag
cccagatccgactcatcgtcgtcgtcctgctacagcggtgagtatttcctgaaaactaaa
cctcgtcttcacctccacgtcgactcggcccggatcgtcacaccttcctgcgtaactccg
acacatttccagcatttaacgactcgacaggagcgtcggcagtggttgcataattcaagg
ttcaatccgaggttatccagaaacaaatgtaaaagactttattttaaaacgtga
DBGET
integrated database retrieval system
