Xiphophorus hellerii (green swordtail): 116728444
Help
Entry
116728444 CDS
T07363
Name
(RefSeq) platelet-derived growth factor receptor beta-like
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
xhe04510
Focal adhesion
xhe04540
Gap junction
xhe04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116728444
04020 Calcium signaling pathway
116728444
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116728444
04540 Gap junction
116728444
09142 Cell motility
04810 Regulation of actin cytoskeleton
116728444
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116728444
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xhe04090
]
116728444
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
116728444
Protein kinases [BR:
xhe01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
116728444
CD molecules [BR:
xhe04090
]
Proteins
116728444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Motif
Other DBs
NCBI-GeneID:
116728444
NCBI-ProteinID:
XP_032432459
LinkDB
All DBs
Position
11:7750668..7761355
Genome browser
AA seq
1038 aa
AA seq
DB search
MTASIRATTGSLSLLHFLLGVFLSRPEGGVALELLPSSPEVLLQSQSNFSVVCSGWSEVK
WRLPQDADGGPEVLVQVDGSSRILQLFGATWRSSGRYTCEEPSADQSRAVDVFVPGQGPE
QWFVPQNSSQVYKHSEEGTIPCVVSDPKLNVSLFERPGRTAVGGVRYEPALGFMGRLNDA
GHVCVATDGDQEKESQVFYVFTVLEPKQMEMELSVSSQVLKQGEVLTMNCSVRDVDMAFF
TWTFPRRQEVEPLTDILSNEIRSFINISKATESDSGVYVCKAQDSQFRWTVRKNITITVL
DRGYVYLWPSGETNISSLVHHTVELKVQCDAHPTPTFTWSRPNQTIAIETSSINTTHLTS
SRYVSTLTLHQVQLDQTGTYTATASNEDSREDVIFYLQVTAPPRIVSLSEVDKKDILCVS
EGVPTPSVTWYTCPRSIRCSNLSDGWRSQLGTLEQDVTTVIEGGGTLVKSVLTLKTLNSV
SAVRCEATNAAGGRARDLRVLRTSLLSQVVVLVAVLVLVIIGVIFFIILIALWRNKPHYE
ARWKLMESEGSDGQPGSYVDPGDLPYSSAWEIPRDQVALGQVLGSGPFGRVVEATVSGLT
GSDSPTKAAVKIMKSRRDAAQSLVSELKVLGYLGPHLNVVNLLGACTSPGPVYLITEFCR
HGNLLSYLQRNKDTFGQVDMPIRSNSDGGYMDMNQDGRGRYVPLKELKDTEQGISHAPTD
HQKAPSLLLSDSPVLTLEDLLSFSFQVAQAMDFLSSRKCVHRDLGARNVLVCEGKLLKIC
DFGLARDLQKDEDYVIRRNSFLPLRWMSPESIFQNIYSTESDVWSYGVLLWEIFSLGCAP
YPDLLTTRQFSSALKRGHRMDRPEHATSDMYAVMKQCWDEDPLSRPSFSSLVAAVGNMLP
ADYRQRYAQLTEDFLRGDGPAVLQSRRSLSRTTETETETDVQLDRNSSHCAARFQEAELG
FHFTGSPSSDVKERLLEAEPDDSGPSHNPCIMPVVTMETSSSTALDAVSPLLSAAILESQ
EVTSPPEAPAEEEEESCL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgacggcatccatcagagccacaacaggaagtctgagcctcctgcacttcctgctgggt
gtgttcctgagccgtccagaagggggcgtggccctggagctgctaccttcctccccagaa
gttctcctccaatcacagtccaatttctccgtggtgtgttcagggtggagtgaggtgaag
tggcgcttgcctcaggatgctgacggaggtccagaggttctggtgcaagtcgacggctcc
agtcgcatcctgcagctctttggcgccacctggaggagctccggcaggtacacctgcgag
gagccgtctgccgatcagagccgcgcggtggacgtcttcgtacctggacaaggtccagag
cagtggttcgtcccacagaattcctcccaggtgtacaagcactcagaggaaggtaccatt
ccctgcgtggtgtccgacccaaagctcaacgtctctctgttcgaacgacccggcagaacc
gcagtgggcggggtcagatacgagccggctctgggcttcatgggacgcctcaacgatgca
ggacatgtctgcgtggcgacagacggagaccaggagaaggagtcccaggttttctatgtc
ttcaccgtcctcgaaccgaagcagatggagatggagctgtcagtgtccagccaggtcctg
aagcagggggaggtcctgaccatgaactgctccgtcagagatgtggacatggccttcttc
acttggaccttcccccgcagacaggaagtagaacctctgacagacatcctgtccaatgaa
attcgctcgttcattaacatctccaaggcaacagagtcagactcaggtgtgtatgtgtgc
aaagctcaggactcgcagtttagatggaccgtgaggaaaaacatcacaataactgttctg
gaccgaggctatgtctacctgtggccctcaggtgagaccaacatctcatctctcgtccac
cacaccgtggagttgaaggtacaatgtgacgcccaccccacgcccaccttcacctggtcc
aggccaaaccagactatcgccatagaaaccagctccatcaacaccactcacctgaccagc
agcaggtatgtgagcaccctgacgctccatcaggtgcagttggaccagacaggaacttac
actgcaactgcatccaacgaggacagcagagaggacgtcatcttctacctgcaggtcaca
gctcctccaaggattgtgtctctgtcagaagttgataagaaagacatcctgtgtgtcagt
gagggagtcccgactccatctgttacctggtacacctgtccacgttcgatcaggtgcagt
aatctgagtgacggttggaggagccagttagggacgttggaacaggacgtcaccacagtg
atagaaggaggcggtaccctggtaaaaagtgtgttgactctgaaaactctgaactctgtg
tcggctgttcgctgcgaagctacgaacgcagcaggaggacgagcgcgagacctgcgagtc
cttcgcacctcccttctgtcccaagtggtcgtcttggtggcggtcctggtcctggtcatc
ataggtgtgatcttcttcatcatcctcattgctctctggagaaacaagcctcactatgaa
gctcgctggaagctgatggagtctgaaggttctgacggacagccgggttcctacgtggac
cctggagacctgccctacagctccgcctgggagatccccagagaccaggtggcactcggt
caggtcctgggttctggtccatttggacgggttgtagaggcaacagtttctggtctgact
ggctctgactcaccaaccaaagctgcagtgaagatcatgaaatccaggagggatgcggcc
cagtctctcgtgtccgagttaaaggttctgggttacctgggtcctcatctgaacgttgtc
aacctgctgggagcctgcaccagcccaggtccagtttacctgatcactgagttctgtcgt
catggcaacctgctgagctacttgcagaggaacaaagacacatttggacaggtggacatg
cccatcaggagtaacagcgacggcggctacatggacatgaaccaagatggacggggacgt
tatgtccctctgaaggagctgaaggacaccgagcaggggataagccacgcccccacagac
caccagaaggcgccatcgctcctccttagtgactctcccgtcctcaccctggaagacctg
ctcagtttctccttccaggtcgctcaggccatggatttcctgtcctccaggaagtgtgtc
cacagagacctgggagccaggaacgtcctggtctgtgaggggaagctgctgaagatctgt
gattttggtttggccagagaccttcagaaggacgaagattacgtcatcaggagaaacagc
ttcctgccactgaggtggatgtctccagagagcatcttccagaacatctacagcactgag
agcgacgtgtggtcctacggagtcctgctgtgggagatcttctctctgggctgcgccccg
tatcctgacctcctgacaacccgacagtttagttctgctctgaaaagaggacacagaatg
gaccgaccggaacacgctacgtctgacatgtatgctgtgatgaagcagtgctgggatgaa
gatcctctctccagaccatctttctcatcattggttgctgctgtgggcaacatgttgcca
gctgactaccgacagcggtacgcccagctgaccgaagacttcctgagaggagacggcccg
gctgtactgcagtccagacgcagcctgtcccggacgaccgagacggagacagagacggac
gtccagttggacagaaactcctcccactgtgccgcacgcttccaggaagctgaactcggc
tttcacttcacaggaagtccttcctctgacgtgaaggagcgcctgctggaggcggaacca
gatgactcaggcccctcccataatccttgcatcatgcctgtcgtcactatggaaaccagc
agcagcactgcgctggacgcagtcagccctttgctgtcagccgccatcttggagtcacag
gaagtgacatcaccaccagaagctcctgctgaggaagaggaggagagctgcctgtga
DBGET
integrated database retrieval system
