Xiphophorus hellerii (green swordtail): 116733235
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Entry
116733235 CDS
T07363
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116733235
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116733235
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116733235
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116733235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
116733235
NCBI-ProteinID:
XP_032439909
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Position
14:complement(23193329..23330941)
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AA seq
1093 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPVFSLIYLLAPKSAL
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSFWYLLMWLHNKLCRTGQPPGEASHKCENLREFTERHADSLIQNQHYQ
EVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRHYSSS
SETTKDDGAMASEDDSESGDGPGEGGGGGGVGVQKSKSVTFSNPVEDDRRPAPTLGVSAL
VRSISGMTRIDKAEEGRLEDRVGWGEEEEEEEGKPKSNGLKTAVMPPSSTNVLPSPSSSF
SSSLSSSLSRTRTRLQRLSSPSAKTDSFKRLSYLFSRSKRKAPPTPLPLQSPPSYTISDG
LLRPLGSHSHSDFGLSDVTRSDTHLNEVGRSVDMPSFSPLRTNGRDSLLTLPLPPPCPCQ
SLHCASNMSESSSRLLDSSEDVFQGEGIEGAGEEGMDGGGGGGMMMMGGWVGPCDDVLED
SCDVIEDSVTTQL
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaatgacacagctgtactacaaaaaggcgacctattcgccgtaccgcgaccgc
atcccgcttcagatcgtccgagctgaagtggagctgtcagctgaggagcgggcctacctc
accgctgtggagaaaggtgactatgccggcgtcaaacacgccctgcgcgaggccgaggtt
tactacaacatggacgtgaactgtctggacccgctgggccgcagcgcgctgctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgctggaccacggcatccacacgggc
gacgccctgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtcg
cacaggaggccgagcggcgagaagcaggttccctccctgatgatggacagccagttctca
gagttcacccccgacataactcccatcatgctcgctgctcacaccaacaactacgagatc
atcaagctgcttgtccagcgcaaggtcaccatcccaaggccacaccagatacgatgcgac
tgcgttgagtgtgtttccagttcagaagtcgacagccttcgacattctcggtctcgactc
aacatctacaaggcgctggcgtcaccgtctctcatcgcgctgtccagtgaggatcccatc
ctcactgccttcagactgggctgggaactcaaagagctgagcaaggtggagaacgagttt
cgccaggagtacgaggagctttcccagcagtgcaaacgattcgccaaggacctcctggat
caggccagaagttcccgcgagctggagaccatcctgaaccacagagacaacgaccagagc
gaggagctggaccccaggcagtgccacgacttggccaagctcaagctcgccatcaagtac
caccagaaggagtttgtagcgcagccaaactgccagcagctgctagccactctttggtac
gacggtttcccgggctggaggagacgacactgggccgtcaaactggtgacctgcttcatc
atcggactgctgttcccagtcttctcactgatctacctgttggccccaaagagcgctctg
gggcgcttcatcaagaaacccttcatcaagttcatctgccacaccgcgtcctacctgacc
ttcctcttcctcctgctgctggcgtcgcagcacatcgcccgcaccaacctgcacatgcag
ggacccccacccaccattgtggagtggatgatccttccctgggtgctgggttttatctgg
gcagagatcaaggagatgtgggatgggggattcacagagtacatccatgactggtggaac
ctaatggactttgccatgaactccctctacctggccaccatttctctgaagatagtggct
tacgtcaagtacaactcctctcgtccaagggaggagtgggagatgtggcacccgacgctg
atcgccgaggctctgttcgccatcgccaacatcttcagctcgctcagactcatctccctc
ttcacagccaactcccacctcggccctctgcagatctctctggggaggatgctgctggac
atcctcaagtttctcttcatttactgtctggttctgttagcgtttgctaatggactcaac
cagctgtatttctactacgagaccaaggcttcagaagaaccaaacaactgcaaggggatc
cgctgtgaaaggcagaataacgccttctccacgttatttgagactctccagtcgctcttc
tggtccatatttgggctgctcaacctttacgtcaccaacgtgaaagctcgccacgagttc
accgagttcgtcggggcgacgatgttcgggacgtacaacgtcatctctctggtggttctg
ctgaacatgctcatcgccatgatgaacaactcctaccaactcatcgctgaccacgccgac
attgagtggaagtttgcccgcaccaagctgtggatgagctactttgatgagggcggcacg
ctgccccctcccttcaacatcatccccagcccaaagtccttctggtacctcctgatgtgg
ctccacaacaagctgtgcaggacaggccagccgcccggagaggcctcacacaaatgcgaa
aaccttcgagagttcactgagcgccatgctgacagtctgatacagaaccagcattaccag
gaagtgattcgaaatctggtgaagagatacgttgccgccatgatacgaagcgccaaaacg
gatgaagggctgacagaggaaaacttcaaggagttgaagcaggatatctccagtttccgc
tatgaagtcttggatctcctcggcaaccggcgtcctccccggcgacactattcttcatcc
agcgagacgacaaaagacgatggtgccatggcgtcagaggatgacagcgaatcaggtgat
ggccctggagaaggagggggaggaggaggcgttggagtccagaagtcgaagagcgtcacc
ttctccaacccggtggaggacgacagaaggccagcgccgacactcggcgtgtctgcgctg
gtgcgctccatttcaggaatgacgcggatagacaaagcagaggagggaagactggaggac
agagtggggtggggagaagaggaggaggaagaggaggggaaaccaaaaagcaacgggcta
aagacggccgtcatgcctccgtcctccaccaatgtcctcccctcgccatcgtcatcattt
tcctcttcgttatcatcatcgctttctcgcacaaggacccgcctgcagcgcctctcgtcc
ccaagcgcaaagacagactctttcaaacgcctctcctacctgttctcccgctccaaacgc
aaagccccacccacgccgctgcctctccagtccccgccctcgtacaccatctccgacggg
ctgctccgccccctcgggagccacagtcactccgacttcggactcagcgacgtcaccaga
agcgacactcacctgaacgaggtgggtcgctcggtggacatgccgtcattctcgccgctg
agaacgaacgggcgggactcgctcctgacgcttcccctcccgccgccatgcccctgccaa
tccctgcactgtgcttccaacatgtctgagtccagctcgcgactgctggactccagcgag
gacgttttccagggagagggcatagaaggggcaggcgaagaaggcatggacggaggaggc
ggagggggaatgatgatgatgggggggtgggtgggaccatgtgacgatgtcttagaggac
agctgcgatgtcatagaggactctgttaccacgcagctatag
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