Xiphophorus hellerii (green swordtail): 116734246 Help Entry 116734246         CDS       T07363                                  Symbol thbs1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04115   p53 signaling pathway xhe04145   Phagosome xhe04148   Efferocytosis xhe04350   TGF-beta signaling pathway xhe04510   Focal adhesion xhe04512   ECM-receptor interaction xhe04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xhe00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116734246 (thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116734246 (thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116734246 (thbs1)    04148 Efferocytosis     116734246 (thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     116734246 (thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     116734246 (thbs1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     116734246 (thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:xhe04131]     116734246 (thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:xhe00536]     116734246 (thbs1) Membrane trafficking [BR:xhe04131]  Endocytosis   Phagocytosis    Opsonins     116734246 (thbs1) Glycosaminoglycan binding proteins [BR:xhe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116734246 (thbs1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF cEGF TSP1_CCN Motif Other DBs NCBI-GeneID:  116734246 NCBI-ProteinID:  XP_032441406 LinkDB All DBs Position 15:complement(10869264..10883520) Genome browser AA seq 1169 aa AA seqDB search MKVTGICLLLMLCSCEGARVAESRDDNSVFDLFELIRVPSKNHGVTLAKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSVHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDIVYSTENKQQVVSIEEVDLATGSWKNITLFVQEDRAQLFAGCEEVNTAELDA PIQNILTQGTPAGAQLRVGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQSAASSDTM IVTNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTN ENKLIKNRIGIHSGVCIHNGIVRKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNICEGTSVQTR DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQLGGRDCVGEGRQT EKCEESPCPINGNWGPWSPWGTCTLTCGGGVQTRERLCNDPAPLHGGKECVGDAIDRQMC NKKACPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGFTGNGIKCKDVDECKEVPDACFE FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAVANKQVCTPRNPCLDGSHDCNKNA RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGTGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDEVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTAGQVRTLWHDPKNIGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaaggtgacaggaatatgtttgctgttgatgctttgttcctgtgaaggtgcgagagtc gcagagagtagagacgacaatagtgtgtttgatttgtttgagctcatccgagtccccagt aagaaccacggggtcaccctggcgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccagaccttatccccccggtccccgagagcgccttcagggacctgatcgactcg gtccacgcggaaaggggcttcctacttctgctcaacttcaagcagtttaaacggaccagg ggcagcctcctgacagtggagaagcgagacggctccggagccgtcttcgagatcgtctcc aacggcaaggcgaacaccctggatatcgtttactccaccgagaacaagcagcaggtggtt tccatcgaggaggtggatctggccacgggtagctggaagaacatcacgctcttcgtgcag gaggaccgggcgcagctgttcgcaggatgcgaggaggtgaacaccgccgagctggatgcg cccatccagaacatcctgactcaaggcactccagccggcgcgcagctccgagtcgggaag ggagcagtgaacgacaggttcatgggagtgctgcaaaacgtgcggtttgtgtttggaaca acgctggacgcgatcctgcgcaacaaaggatgccagagcgctgcttcaagtgacacaatg attgtgaccaacctgaacggctcctctgccatcagaacagagtacactggacacaaaact aaagacctacagatggtgtgtggcttctcctgtgaggatctgatcagcatgttcaaggag ctgaaaggcctcggtgtcgtggtcaaggagctgtccaatgagctccgccaactgacaaat gagaacaagcttattaagaaccgcattggcatacatagtggcgtctgcatccacaacggc attgtgcgcaagaacaaagacgaatggaccgtcgatgactgcactgagtgcacttgtcag aactctgccaccgtgtgccgcaaaatctcctgccctctgatcccatgtgccaacgccacc gtccccgatggcgaatgctgtcctcgttgtggaacaccgagtgactatgctgaggacggc tggtcgccctggtctgaatggactcattgttctgtgtcatgtgggcggggcatccagcag cgtgggcgctcttgcgaccgtatcaataatatctgcgagggcacttcggtgcaaacccgc gactgttacctccaggagtgtgacaagcgcttcaagcaggacggaaactggagtcattgg tcaccctggtcgtcgtgctccgtcacctgtggttctggtgtcatcactcgtatccgcctc tgcaactcccccacccctcagctgggaggcagggactgtgtgggagagggccgacaaact gagaagtgcgaggagtctccatgtcccattaacgggaactggggaccctggtcaccttgg ggtacgtgcaccctcacctgtgggggtggagttcaaactcgtgagcgcctgtgcaatgat cctgccccactgcatggtggtaaagagtgtgttggcgatgccatagacagacagatgtgc aataagaaagcttgcccaatagatggatgcttgtccaacccttgcttttctggagccaag tgcactagtttccctgatggttcctggaagtgtgggaaatgcccagttggcttcacagga aatggcataaagtgcaaagatgttgacgagtgcaaggaggtaccagatgcgtgctttgag tttaacggtgtgcaccgctgtgagaacacagagccaggatacaactgtctgccctgccct cctcgctactcaggaccccaaccatttggcaaaggtgttgagcaagctgttgctaacaaa caggtgtgcacaccccgtaatccttgcctcgatggaagccatgactgcaacaaaaacgct cgctgcaactacctcggacacttttccgaccccatgttccgctgcgagtgcaagcctgga tatgctggcaatggtcatatctgtggagaggacacagatttggacggatggcccaatgct gatctggtctgtgtggagaatgccacctaccattgtaaaaaggacaactgtcccaatctt ccaaactcagggcaggaagattatgataaagatggaactggagacgcatgtgatgatgat gatgacaatgatggtattcctgatgacagggacaactgtccgtttgtgtacaatcccagg cagtatgattatgaccgcgatgaagtgggggatcgctgtgacaactgcccttacaatagc aacccagaccagacagacacagacaacaacggcgagggagacgcctgtgctgtggacatc gatggagatggaatactgaatgagaaggacaactgtccctatatatacaacgttgaccag agagacacagatctggacggagtgggagacatgtgtgataactgtcctctggaacataat cccgatcaggtggattcagatgatgatagagtgggagacaagtgtgacagtaaccaggac atcgacgaggacggacaccagaacaacctggacaattgtccatatattcccaacgccaac caggctgatcacgacaaggatggcaagggagatgcctgtgaccatgatgatgacaacgat ggcatccctgatgacaaagacaactgtagactggccttcaaccccgaccagctggattct gatggcgatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgttcctgat atctatgatgtttgtcctgagaacttcgatatcagtgagacagacttccgcaagttccag atggttcctctggatccaaaaggcacctcccagattgatcctaactgggttgtccggcat caaggcaaagagctggttcagactgtcaactgcgatcctggaattgcagttggttaccac gagttcaacgctgtggacttcagtggaactttcttcataaacacagagagagatgacgat tatgctggctttgtgttcggctaccaatccagttccaggttctacgttgtgatgtggaag cagattacgcagacctactggtccagtaaacccaccaaagcccagggatactcaggcctg tccatcaaagtagttaactccaccaccggcccaggagagcaccttagaaatgctctctgg cacacgggcaacaccgcaggacaggtccgcactctctggcacgaccctaaaaatatcggc tggaaagacttcactgcctacaggtggcatctgattcacaggccaagaacaggactgatc agagttgtgatgtatgagggtaagaagatcatggcagattctggtagcatctacgacaag acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca gacctcaagtatgaatgcagagatgcataa

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