Xiphophorus hellerii (green swordtail): 116734446
Help
Entry
116734446 CDS
T07363
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116734446
Membrane trafficking [BR:
xhe04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
116734446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
116734446
NCBI-ProteinID:
XP_032441748
LinkDB
All DBs
Position
15:complement(6844156..6913548)
Genome browser
AA seq
2048 aa
AA seq
DB search
MMSLVVHLKTAAHLRGKGDRIAKVTFRGLPLYSRVAENCGEVAHFNETFRWPIASRLDQN
EMLEIQVYNYSKVFTNRLVGTFCMVLQKVAEEGHLELTDTLIDDNNMSIKTSVTIDIRYQ
LMDGTGGMWSDGEFLDVPDDRDGMFAFETDSLLSGQSHGSGTSPGRSLQGSIPTFRKAGR
GVFSAMKLGKTKCSKDDHKRGDELAVLEMEDLDKKAMRLAGMLEPDTISLASVTAVTTNV
SNKRSKPDIKMEPSSGRPVDYQISITVIEARQLIGLNMDPVVCVEVGDDKKYTSMKESTN
CPYYNEYFVFDFHVPPDVMFDKIIKLSVIHSKNLLRSGTLVGTFKMDVGTVYSQPEHQFY
HKWAVLSDPDDITAGCKGYVKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGIPAE
RQWARFYVKIHRAEGLPKMNTSIMANVKKAFIGENRDLVDPYVQVQFSGQKGKTSVQKSS
YEPIWNEQVIFTELFPPLCKRIKVQIRDSDKVNDVAIGTHFVDLRKISNDGDKGFLPTLG
PAWVNMYGSTRQYTLMDEHQDLNDGLGEGVSFRARLLISVAVEILDTTSPETICSTDVQV
EPVSNISESATGKMEEFFLFGSFLEATMIDRKIGDKPISFEITIGNYGNHIDGVSKSSSV
KKKKKEDENQEEENELIQNSSEDEADEDADLTSVSSTPPMKPFITDRNYFHLPYFEKKPC
VYIKSWWQDQRRRLYNSNMMDKIADKLEEGLNDVQEIIKTEKAFPERRLRGALEELTIGC
SRYVTLANKDVNLAGRTKLDRERLKSCMREMDSMGQQAKQIRTQVKKNTVKEKLKLAQNF
LQRLRFLADEPQHSIPDVFIWMMSNNKRIAYARIPSKDILFSVVDEETGKDCGKVKAVFL
KLPGKKGFGPAGWTVQAKLELYLWLGLNKSRKDFLNGLPNGFEEIRATKTGHGLPPVTLV
YDMKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFSSQSQVTEVLNETLCPTWDQLLVF
DDVELFGEATELRDDPPIIVVEFYDQDTVGKAEFIGRTFAKPTIKMRDEPYGPPRFPPQL
EYYQIYRGNSIAGELLAAFELLQIPFDAEEIRRALIAVHDFAVPQIKVGQGGRADLPPLE
GPTDSERGPILPVPLGIRPVLSRYRIEVLFWGLRDLKRINLAQVDRPRVDIECAGRGVQS
VLIQNYKKNPNFSTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYILVGSHAVSTLRHF
IYSLPDKSCNNWATAAKLMNGYMVLTNGCSQARSSPSFSSRTFSRPAGDISVNLEAEPPI
RKMDTVVKLDAMSDAVVKVDMNEDESDKEKKKKKKKKKGGVEEEEETDERVLDWWSKYFA
SIETLKENLRSQEAAQAEAEEREDLEIAAEAAEIRPDDLHLKGSKMKERFKEKKSSKQKR
SHAADSSEKRPPKARVDELVVYNKELESEYGNFEDWLHTFNLYRGKAGDDDEHALDDDRI
VGRFKGSLCMYKVPLSQEITREAGYDPNMGMFQSIPHNDPIHVLVRVYVVRATDLHPADI
NGKADPYIAIKLGKSEIKDKENYISKQLNPVFGKSFDIEATFPMESMLTVSVYDWDLVGT
DDLIGETKIDLENRFYSKFRATCGIASNYSLHGYNIWRDPMKPSQILAKLCKEGKIDGPH
YGPGGKVKVANRIFTGPTEIEDENGLKKQTEEHLALSVLNHWEEIPRVGCKLVPEHVETR
PLLNPDKPGIEQGRLEMWVDMFPMDMPAPGPAIDTSPRKPKRYELRVIIWNTDEVILEDD
DYFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRFVFPFDYLVAEEKIVIS
KKESMFSWDETEYKIPARLTMQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCNLDMI
RNEQELPTISIFKQKRVKGWWPFVARDENDEMELTGKVEAELHLVTAEEAEKSPVGLGRN
EPDPLEKPNRPDTSLMWFLGPLKSLRYFIWHNYRWLILKALGLILLLLMLGLFLYSIPGY
LVKKILGA
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctctagtggttcacctgaagacggcggctcaccttcgggggaaaggtgacagg
atcgcgaaagttacattcagaggtctgcccctctacagccgcgtagcagagaactgtggg
gaggtggctcactttaatgagacttttcgctggcccattgccagcagacttgatcaaaat
gagatgttggagatccaagtgtacaattacagcaaagtcttcacaaatagacttgtcggg
acattctgcatggtgcttcagaaagtggctgaagagggacatctagagctgacagatacc
ctcattgatgacaacaacatgtcaataaagaccagtgtcaccatagatatcagataccag
ctgatggatggcacaggggggatgtggagcgatggagagttcctggatgttcctgatgac
cgtgatgggatgtttgctttcgaaacagacagtttgctttcaggacagagccacggatca
gggacatctcctggacggtcattacaggggtccataccaaccttcagaaaagcagggaga
ggagttttctcagccatgaaacttggcaagacaaaatgctcaaaagatgaccataaaaga
ggagatgaactagccgtcctggaaatggaagatctggataagaaagccatgcgtcttgct
ggaatgctggagccggacaccatatctttggcctcagtgactgctgtcacgactaatgtt
tccaataaaaggtcaaagccagatatcaagatggaaccaagctctggaagacccgttgat
tatcagatcagtatcacagtgattgaggctcggcagctaataggcctgaacatggatcct
gtggtatgtgtggaggttggagatgacaagaaatatacatccatgaaggagtccaccaat
tgtccgtactataatgagtattttgtcttcgatttccacgtcccaccagatgtcatgttt
gacaagatcatcaagctctcggttattcattctaaaaaccttttaagaagcgggacgttg
gtgggaacctttaagatggatgttgggactgtttactctcagcctgaacaccagttctac
cacaaatgggccgtcctatctgatcccgatgacatcacagcggggtgcaaaggatatgta
aagtgtgacattgcagttgtcgggaaaggtgataacatcaagacgccgcataaagccaat
gagacggatgaggatgacatagaaggaaatctgctcctcccagaaggcatcccagcagag
aggcaatgggcgagattttatgtgaagatccaccgagctgaaggacttcctaaaatgaac
accagcatcatggcgaatgtgaaaaaggcttttattggagagaacagagaccttgttgac
ccctatgttcaagtgcagttttctgggcaaaagggaaagacttcggtccagaagagcagc
tatgaaccaatctggaacgagcaagtcatcttcacagagctgttccctcctctttgcaag
aggatcaaggtgcagattagagactcggataaggtcaatgacgttgccataggaacccac
ttcgtcgatctacggaagatctcaaatgatggtgataaaggttttttgcccaccctgggt
cctgcctgggtcaacatgtacggctccactcgtcagtacactctgatggatgagcaccag
gacctaaacgatggtctcggcgaaggtgtgtccttcagagcacgcctccttatttcggta
gccgtggagatcctggacactacgtcgcctgaaaccatctgctcaactgatgttcaggtg
gagcctgtctccaacatttcagagagtgccacagggaaaatggaggagttcttcttgttt
ggttcgtttctggaggctactatgatcgacagaaagattggtgacaaaccgataagtttt
gaaatcacaataggaaattatggcaaccacattgatggcgtgagcaaatcctcctctgtg
aagaagaaaaagaaggaagacgagaatcaggaggaggaaaatgagctgatccaaaactcc
agtgaggatgaggctgatgaagatgcggacctcacctcagtctcctcgactcctccaatg
aagcctttcatcacagacagaaactacttccatctgccctacttcgaaaagaagccatgt
gtctacatcaagagctggtggcaggatcagaggagacggctttataattcaaacatgatg
gataagattgcagacaagttggaagagggcttgaatgatgttcaagagatcattaagaca
gagaaggcctttccggagcgcagactcaggggagctttggaggagctcacaattggatgc
agtcggtatgtgacacttgccaacaaagatgtgaacctagcaggcagaactaagcttgat
cgagagcggctcaagtcatgcatgagagaaatggacagcatgggacagcaggccaagcag
attcgcacgcaggtgaagaaaaacacggtgaaagaaaaactcaagctggcgcagaacttc
ctgcagagactccgtttccttgccgacgagcctcagcacagcatcccagatgttttcatc
tggatgatgagtaacaacaagcgcatcgcctatgcccgaattccttccaaagacattctg
ttctctgtggtggatgaagagactggcaaagactgtggaaaagtcaaagcagtcttcctc
aagctgcctggtaaaaaggggtttggccctgctggctggacagtccaggctaagctggag
ttatatctgtggctcggcctcaacaagagccggaaggacttcctaaatggtctcccgaat
ggttttgaagagatcagagccaccaaaacaggccatgggcttcctccagtcaccctcgtc
tatgacatgaagcaggtgtttcagctccgagctcacatgtaccaggcccgcagtctgttt
gctgctgacagcagtgggctttcagaccccttcgctcgggttttcttttcctcacaaagc
caggttactgaggttctaaatgagacgctctgccccacgtgggaccagctgctggtgttt
gatgatgtcgagctgttcggagaggctactgagctcagagacgaccctccaatcattgtt
gttgaattctatgaccaagacactgtgggaaaggcagagtttataggtcggacgtttgca
aagcccaccattaagatgcgtgacgagccttatggacccccaaggttccccccacagctg
gagtattaccagatatacagagggaacagcattgcaggagagctgctggctgctttcgag
ctactgcagataccttttgatgcggaggagatcaggcgagctctaatcgctgtccatgac
tttgctgttcctcaaataaaggtaggtcaagggggcagggctgaccttcctcccctcgaa
gggccgacggactcagagcgtggacccatccttcctgttcccctgggcatacgtcccgtc
ctgagtcgctaccgcatagaggtattattctggggattaagggacctgaaaaggatcaat
ttggcccaagttgatcgaccccgggtggacatcgagtgtgcaggtcgaggagttcaatct
gtcctcattcagaactacaagaagaatcccaacttcagcaccctggtcaaatggtttgaa
gtggacctgccagaaaatgagcttctccatcctcctcttaacatccgggtggtggactgc
agagcattcggacgctacatcctggtggggtcccacgctgtttccaccctcagacatttt
atttacagtcttccagacaaaagctgcaacaattgggccactgcagctaagctaatgaat
ggctacatggttctaaccaatggctgctcccaagctcgctcatcacccagcttttcttcc
cgcaccttctctcgtcccgcaggtgacatctccgtcaacctagaagccgaacccccaatc
cgaaagatggacacagttgtcaagttggacgctatgtctgatgctgttgtaaaagttgac
atgaacgaagacgagagtgacaaagaaaaaaagaagaagaaaaagaagaagaagggagga
gtagaggaggaggaagagacggatgagcgagtgctggactggtggtccaagtattttgcc
tccattgagacgctgaaggagaacctcagatcccaggaagcagctcaagcagaggcagag
gagagagaagacctcgagatagcagctgaggcagcagaaatcagacccgatgacctccat
ctaaaaggctccaaaatgaaagaaaggttcaaagagaagaagagctccaagcagaagagg
agtcatgctgcggacagctcagagaagcgaccccctaaagcaagagtggatgagctagtg
gtgtacaacaaagagctggagagtgagtatggcaactttgaggattggcttcacacgttc
aacttgtacagaggaaaagctggagatgatgacgaacacgccctggatgatgacaggatt
gtaggcagattcaagggctctttatgtatgtacaaagtaccactttctcaggagattaca
agagaagctgggtatgatcccaatatggggatgttccagagcattccgcataacgacccc
atccacgttcttgttcgtgtctatgtggtcagggccacagaccttcatccagctgatatc
aatgggaaggctgatccatacatcgccattaagctgggcaaatcagaaatcaaagacaaa
gagaactacatctccaagcagctcaaccctgtttttggcaaatcctttgacatcgaagcc
accttccccatggagtcgatgttgacggtgtctgtgtatgactgggatttggttggcaca
gacgacctgattggagaaacaaaaattgacctggagaatcggttttacagcaaatttaga
gccacatgtggcattgcgtccaactattctttgcatggttacaacatttggcgtgatcct
atgaaacccagccagatcctagctaagctctgtaaggaagggaagatcgatggacctcat
tatgggcctggaggcaaagtcaaagttgctaatcgaatctttactggaccaacagaaata
gaggatgaaaatggtctgaagaagcaaacagaggagcatttagccctgagcgtgttgaac
cactgggaggagatcccaagagtcggctgcaagcttgttcctgaacatgtggagaccaga
cctcttctgaacccggacaaacctggaatcgaacaggggcgacttgagatgtgggtggac
atgtttccaatggatatgcccgctcctggacctgcaattgatacatcaccacggaaacca
aagagatatgagctcagggtgattatttggaatactgatgaagtaatactggaagacgat
gattacttcactggggaaaagtccagtgacatatttgtgaggggatggctgaaagggcag
caggaagacaaacaggacacagatgtgcattaccattccctaactggtgagggcaacttc
aactggcgctttgtcttcccattcgattacctcgtggctgaagagaagatcgtcatctct
aagaaagagtccatgttctcctgggacgaaactgaatacaagatccctgctcgtctcaca
atgcaggtctgggatgccgaccacttttctgctgatgactttctcggggctattgaactg
gacctgaacaggttcccccgcggtgcaaagacagccaagcagtgcaacctcgacatgatc
cgaaatgagcaagagcttcccaccatttctatcttcaagcagaaaagggtcaaaggctgg
tggccttttgtggcacgtgatgagaacgacgagatggagctcacaggtaaagttgaggct
gagcttcaccttgtgactgcagaggaagcagagaaaagtcctgtggggctggggagaaat
gagccggacccactggagaaaccaaaccgtccggatacgagtctaatgtggtttctgggc
ccactgaagtcacttcgttacttcatctggcacaactaccgctggctgatcctcaaggct
ctggggctgatactgctgctgctcatgctgggcctcttcctctactccatccctggctac
cttgtcaagaagatcctgggggcctga
DBGET
integrated database retrieval system
