Xiphophorus hellerii (green swordtail): 116735002
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Entry
116735002 CDS
T07363
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4-like
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116735002
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116735002
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Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
Motif
Other DBs
NCBI-GeneID:
116735002
NCBI-ProteinID:
XP_032442472
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Position
16:26012301..26072151
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AA seq
1256 aa
AA seq
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MVVQLEKDREGGGGKAGSKKEKDQSWIPKTIKKRVCTTFVENTLSNSGLCQCGGVQELHD
SVATGDYFGAAIVTQWDSQQHSSEYPTDAFGELEFAGAGRRQSHFLRLSCDTPPQVIYTL
MTEHWGLPSPNLVVSVVGGEGHEKIKPWVRDILRKGLVRAAQSTGAWILTGGLKEGVSRC
VGEAVKDHGAAASTVSQKKVTAIGVTPWGLVHNRQQLVNAQGSFPARYHVQNTANDTYCL
DNTCQAFLLVDNGSIGQRGGETVFQLNLEDYISHQRTGIWGSGSIEIPVICMLISGETRI
LERIDTSLKKATPWLVLAGSGKAADFVTDLSAMVFSPTPPAANGEADKSVSAEFCDWVCE
KARKHFPAEDELEKLVNTAMSIYQRRDLITVFHGEQEGSDDFDTILLKALVRASKRLTSM
ASEYTEELKLAVAWNRVDIAKAELFNGDIQWKYEDLEDSMTDALINNKPQFVRLFCDNGL
NILNYLTNNRLESLYRSLSDSLLAYILLQRRLSERQSLAGSQLSVDGAAPGAMETFHMEV
NTGASAKDLSLFEVSRLLQDLLGDVCEPFYYGALGLDPRMGTRRALKQVNKLLQGECIYS
NQCCLSPWAALFIWAVLQNRTEMAIYFWEMAGESVLSALGACKILRELSKLENDSESKLA
MKQLAQRFEKLANDVFGECYQSSESLSFTLLIRKSPVWGGATCLEMATAADARLFFSHDG
VQSLLSEIWWGDMERSTKVWKLILSFLMPPLIYTNLISFRVPEEEIKPCPVHHIRDNDSV
EGNDATVLSISDIIQNCSEEDMEELKTLKENLKDSMKTNSKRPFIVSRWRQFWYAPVTSF
LGNVLMYFLFLCLFAYVLLVDFKSPPPDGPSTLELVLYFWVFTLVCEEIRQTSLGGSLFL
LQRMKKYIQDDWNKCDLTAILLFLLALICRMFPWSFNLGRAVMAIDYMVFTLRLIHIFAI
HKQLGPKIIILGKMVKDVFFFLFFLGVWLTAYGVAHQALLFSYDPRSKWIFRRVFYRPYL
HIFGQINIHEMDADKLEERTCTYNHSEIDAGAEPCLSTYANWLVVILLVIYLLFTNIVLV
NLLIAMFSHTFSKVQEHSDIYWKFQRYNLIVEYHYRPCLAPPFIIFSHLHILIKRHIRQI
PSAKSQHFAMELQGRKASRLNTWEAVQKENLLSAQNKQQRESDTSRLQRTSVKVDSVLKQ
LAEIRDHDRRLRLLETQLNYCCSALSWMTEAMCQSNVITTNQPPPLHKDVTQLSTT
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgcagctggagaaagacagggagggaggcggaggaaaggctgggagcaagaaa
gaaaaggatcagagctggattcccaagaccatcaagaaaagagtgtgcacaacttttgtt
gaaaacactttgagtaacagtgggctctgtcagtgtggtggggtgcaagaattgcatgac
tccgtggcaacaggagactacttcggagcagcaattgttacccagtgggacagccagcag
cactcgtctgaatatcccacagatgcttttggagagttggagtttgctggagctggacgc
agacaaagccattttctgcggctatcatgtgacacacctccacaggtcatctacactctg
atgacagaacattggggcttaccctcccccaacctcgtggtgtcagtggtgggaggtgag
ggacatgagaagattaagccgtgggtgagagatatcctaagaaaagggctggttagggct
gcacagagtacaggggcatggattttgacaggggggctgaaagagggtgtttcccggtgt
gtaggagaggctgtgaaagaccatggggctgcagcttcaactgtgtcccagaaaaaagtc
actgcgattggcgtgacaccttggggtctggtacacaacagacagcagcttgtcaacgcc
cagggaagtttcccagctcgttaccatgtccagaacacagcaaatgatacatactgtttg
gacaacacctgccaagcattcctcttggtggacaatgggagtattggccagcgaggtgga
gagacagtctttcaacttaatctggaggactacatttcccatcagcgcacaggcatctgg
ggtagtggcagtattgaaattcctgtcatttgcatgcttatctcaggagaaaccagaata
ttggagagaatagacacatccctcaaaaaagcaacgccctggttggttcttgctggttct
ggtaaggcagcagatttcgtcactgacttatcagcaatggtcttcagccctacccctcca
gcagcaaatggagaggctgacaagagtgtcagcgcagagttctgtgactgggtttgtgag
aaggcccggaaacacttcccagctgaggacgagttggaaaaactggtcaatactgctatg
agtatttatcaaaggagagacctcattactgtttttcatggagagcaggagggttctgat
gacttcgacacaattctcctcaaagccctggtgagagctagtaaacgtttaaccagtatg
gccagtgagtacacagaggagctaaaactggctgtggcctggaatcgagtagacatcgca
aaagctgagctcttcaatggagacatacagtggaagtatgaggaccttgaggactccatg
acagatgctttgatcaataataagccccagtttgtgcgtctcttctgtgataatggtctc
aacatcctgaattatttgacaaataatcgcttggagagcttgtatcgctcactgtcagat
agcttgctggcatacattctactccagaggcgtctgagtgagagacagagcctggctgga
tctcagctctctgtggacggagctgcaccaggtgccatggagactttccatatggaagta
aacacaggtgcttcagcaaaggatcttagtttgtttgaggtatcccgcctgctgcaggat
ctcttaggtgatgtctgtgagcctttctactatggagctctgggtcttgaccccaggatg
ggcactagaagagcactgaagcaagtcaacaaactcctgcagggcgaatgtatatatagc
aaccagtgctgcctctcaccctgggcagctctcttcatttgggctgttttacagaaccgc
actgaaatggctatatacttctgggaaatggcaggggagtctgtgctaagtgctcttggt
gcctgtaagattctgagggagctttccaaactggagaatgactcggagagcaagctggcc
atgaaacaattggcacagaggtttgagaagctggcaaatgatgtatttggtgagtgttac
caaagcagtgagagcctctccttcacactccttataaggaagtctcctgtgtggggcggg
gctacatgtctggagatggccacggcagccgatgcccgactgttcttcagtcatgatggt
gttcagtctctgttgtctgagatatggtggggtgacatggaaaggtctaccaaggtctgg
aagctgattctctctttcctcatgcctccgctcatctacaccaatctgatcagcttcagg
gtaccagaagaggagatcaaaccttgtccagttcatcacatcagagacaatgacagcgta
gaggggaatgatgccactgtcttgtccatttccgacatcatacaaaactgcagtgaggaa
gacatggaggaattgaagaccctgaaggaaaacttaaaagactccatgaagactaattcc
aaaagaccgtttatcgtttcaaggtggaggcagttttggtatgcccctgtgacctcattc
ctgggcaatgtgctgatgtacttcctgttcctttgcctgtttgcctatgttctgttggtg
gacttcaaaagtcctcccccagacggcccctccactttggaattggtgctttacttttgg
gtcttcacattagtatgtgaagagatccgacagacctctttggggggcagtttatttttg
ctccaaaggatgaagaagtacattcaggatgactggaacaagtgtgacctcacagctatt
cttctttttcttttggctctaatctgcagaatgtttccttggtcattcaatcttggacga
gctgttatggctatagactacatggtctttacacttcgtctgatccatatctttgccatc
cacaaacaacttggacccaaaatcatcattcttggaaaaatggtgaaagatgttttcttt
ttccttttcttcctgggtgtttggctgacggcctatggcgtggcccatcaggcactcctc
ttttcatatgatccccggtctaagtggattttccgcagagtgttctacaggccatatttg
cacatatttggacaaatcaatattcatgaaatggatgccgacaaactggaagaacggacc
tgcacttacaaccattcagaaattgatgcaggagcagaaccctgtctgagtacctatgca
aactggctggttgtaatcctccttgttatctatctgctgtttaccaacatagtgctggtc
aacctactcattgccatgttcagccacaccttttctaaagttcaggagcacagtgacatc
tactggaaatttcagcgttacaatctcattgtggagtaccactatagaccatgtctggca
ccaccattcatcatcttctcccatcttcacattcttatcaagagacacatccgccagatt
ccttctgccaagagtcagcactttgctatggagctacaaggcaggaaggcaagccgtctg
aatacatgggaggctgtgcaaaaagagaacctcttgtctgctcagaataagcagcagaga
gagagcgacacatcacgacttcagcggacttctgttaaggtggacagtgttctgaagcag
ctggcagaaatccgagaccacgaccgaaggctgcgtctacttgagacgcagctgaattac
tgttgcagcgccctctcctggatgactgaagctatgtgtcaaagtaacgtgatcacaact
aatcagcctcctccacttcacaaagatgttacgcaactgtctacaacctga
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