Xiphophorus hellerii (green swordtail): 116735900
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Entry
116735900 CDS
T07363
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116735900 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116735900 (eftud2)
Spliceosome [BR:
xhe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116735900 (eftud2)
Complex C
U5 SnRNP specific factors
116735900 (eftud2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Roc
Ras
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
116735900
NCBI-ProteinID:
XP_032443951
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Position
16:complement(6232108..6247003)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDDDDLDAEDRDIDEGDEDEEDEPANEDEHVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKHKKFTLMEQELPATVYDMEFLAD
LMDGTELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSMRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
TSNSQRSFVEFVLEPLYKILSQVVGDVDTTLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGAKIKIDHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLDDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatttgtatgacgagtttggtaattacatcggtccagagctggactctgat
gacgatgacgatgatctggatgcagaggacagggatattgacgagggggatgaagatgaa
gaagatgagcctgcaaatgaggatgagcacgtacctggcatggaggtggtcctgcatgag
gacaagaaatactatcccacagcggaggaggtttacgggccggaagtggaaactattgtc
caggaagaagacacacaaccgcttactgagcccattatcaagccagtcaagcacaagaag
ttcacattgatggagcaggagttacctgccactgtttatgacatggagtttctggcagat
ttgatggacggtaccgagctgatccgtaacgtcaccctctgcggtcacctccaccatggc
aagacttgttttgtggattgcctgattgagcaaactcatcctgaaatcagaaagagagat
gatgtcgatctccgctacacagacatccttttcactgagcaggagcgaggagtcggcatc
aaaagcactccagtcacgatggtgctgcctgactccagaggaaaatcttaccttttcaac
atcatggatacaccaggccatgtgaacttctctgatgaggtcacatccagcatgaggatc
tcagatggagttgtcctctttatcgatgcagctgaaggagtgatgctgaacacggagcgc
ctgatcaaacatgcagtacaggagcgcatggccatcaccatctgcatcaacaaggtggac
cggctcattgttgagctcaaactgccgccaacagatgcttattataaacttcgacacatt
gtggatgaggtcaacggtatgctcagtacgtactccacagacgagaacttggtggtgtct
ccgctcctcgggaatgtttgcttcgccagctctcagtacagcatctgtttcaccctgggg
tcctttgccaagatctactcagacacctacggtgatatcaactataacgagtttgcaaag
cggctttggggagacatttatttcaaccccaaaactcgtaagttcacaaagaaagctccc
accagtaactcccagcgcagctttgtggagtttgtcctggagcctctttacaagatcctc
tcacaggtggttggggatgtggacaccaccctgccccgggttctggatgaacttgggatc
cacttgaccaaggaggagctgaagctgaacatcaggcctctgctccggctggtctgtaac
cgtttcttcggagagttcaccggttttgtggacatgtgcgtgcaacacatcccctcacca
caagagggtgctaaaataaagatagaccacacatacacaggaggactagactctgacttg
ggagaagccatggcagaatgtgatcctgatggtcccttgatgtgccacaccactaagatg
tacagcactgaggatggggtccagttccacgcctttggtagggttctgagcggtaccatt
caggcaggtcagccggtcaaggttctgggagagaactacacgctggatgacgaggaagac
tcgcagatttgcactgtgggtcgcctctggatctctgttgccagataccaaatcgaagtg
aaccgagttcctgcaggaaactgggttctgatcgaaggctgtgaccagccaatcgtgaag
acggccaccatcacagaaccacgggggaacgaagaggctcagattttcaggccgttaaag
tttaacacagcttcagtcatcaagatcgccgtggagcccgtaaacccgtccgagcttccc
aagatgttggacggactgaggaaggtcaacaagagctacccttctctaaccacaaaggtg
gaagagtctggagagcatgtcatcttagggacaggagagctttacctggattgtgtcatg
catgatctgaggaagatgtactccgaaattgacattaaagtcgctgatcccgttgtgacc
ttttgtgaaacggtggttgagacttcgtctcttaagtgttttgctgagacgcccaacaaa
aagaataagatcaccatgattgctgagcctctggagaaggggctcgctgaggacatcgag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagagttcttccagacgaag
tacgactgggatctgctggctgccaggtctatctgggcctttggaccagacacaacgggg
ccaaatattctcgtggatgacacgcttccttcggaggtggacaaagctttgctcggttca
gtcaaagacagcatcgttcagggcttccagtggggcaccagggagggacctctgtgtgat
gagcctattagaaatgtgaagtttaagatcctggatgccgtcatcgctcaggagcctctc
cacagaggaggaggtcaggtcatcccgacagccaggagggtggtctactccgcctttctc
atggccactccaaggttaatggagccgtattactttgtggaggtccaggctccagctgac
tgtgtatctgccgtctacaccgttctggctagaagaagaggtcacgtcacccaggatgca
cccatacccggctctcctctctacaccatcaaggctttcatcccggccatagactcgttc
ggctttgagaccgaccttcgcacacacacacagggtcaggccttcgcgctgtctgtgttc
caccactggcagattgttcccggtgacccgctggacaagagcattgtgatccggcccctc
gagcctcaacccgccccccacctggcccgagagttcatgatcaagaccagaagacgcaag
ggtctgagcgaagatgtgagcatcagcaagttctttgacgatcccatgttgttggagttg
gcgaagcaggacgtggtgcttaattatccgatgtga
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