Xenorhabdus hominickii: A9255_01110
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Entry
A9255_01110 CDS
T04538
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xho
Xenorhabdus hominickii
Pathway
xho03030
DNA replication
xho03410
Base excision repair
xho03420
Nucleotide excision repair
xho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A9255_01110 (ligA)
03410 Base excision repair
A9255_01110 (ligA)
03420 Nucleotide excision repair
A9255_01110 (ligA)
03430 Mismatch repair
A9255_01110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xho03032
]
A9255_01110 (ligA)
03400 DNA repair and recombination proteins [BR:
xho03400
]
A9255_01110 (ligA)
Enzymes [BR:
xho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A9255_01110 (ligA)
DNA replication proteins [BR:
xho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A9255_01110 (ligA)
DNA repair and recombination proteins [BR:
xho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A9255_01110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A9255_01110 (ligA)
MMR (mismatch excision repair)
DNA ligase
A9255_01110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A9255_01110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RNA_ligase
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AOM39336
UniProt:
A0A2G0Q6R2
LinkDB
All DBs
Position
205779..207797
Genome browser
AA seq
672 aa
AA seq
DB search
MENIIEKINKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQYPALITPDSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSRDLVFCCELKLDGLA
VSLLYENGELVQAATRGDGTMGENITANVRTIHAIPLRLKGESIPARVEIRGEVFIKQAG
FEKLNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRSLTFYCYGVGVLEGGELPASHY
ERLMQFKQWGLPVSDKVKLCQGTQQVMNFYQNIAQQRPTLGFDIDGVVVKVDSLELQETL
GFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVVIRRAGDVIPQVVGVVHESRPTETQEVIFPKYCPVCGSDIERVEG
EAVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAG
KLTGLERMGPKSAQNVINALEKAKKTTFARFIYSLGIREVGEATAVNLVSYFGTLEKLCA
ANTESLIEVQDVGGIVASHVVNFFGEPHNQVVIDDLVNNIGIHWESEEGPDLEEIDSPLV
GKIVVLTGSLSRLSRDEAKDKLTALGAKVTGSVSKKTDLVIAGEVAGSKLAKANELGIPV
IDEEEMLQLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattatcgaaaaaatcaacaaattaagaacaacattgcgtcatcatgaatat
ttgtatcatgttatggatgcaccagagatccctgatgctgagtatgatcgcttgatgcga
gaattaaaagcgctggaagagcagtatccagcactgattacacctgattctcccactcag
cgcgttggtgccgccccattgactgcttttgagcaggtgcgtcatgaaatccccatgttg
tctttggataacgtatttgatgaagaaagttatctggcgtttgataagcgtgtccgtgat
cgcttgaaagacagtcgtgatttagttttttgttgcgaactgaaactcgatggtttagcc
gtcagtttgttgtatgaaaatggggagttggtgcaggctgcgactcgtggagatgggaca
atgggggaaaacattacggccaatgtccgcactattcacgctattcccctacgcttgaag
ggagaaagtattcctgcccgcgttgaaatccgtggtgaagtattcataaaacaggctggg
tttgaaaaactcaacgaagaagcccgtcgtacaggaaataaagtctttgccaatcctcgc
aatgcggcagcgggttcattgcggcagcttgatccacgtattaccgcaaaacgttcactc
actttctattgctatggtgttggtgttctggaggggggagaattgccagccagtcattac
gaacgtttgatgcagtttaagcaatggggattacctgtcagcgacaaagtgaaattgtgt
cagggtactcaacaagtgatgaatttttaccaaaacattgcacagcagcgcccgacacta
ggctttgatattgatggtgtagtggtcaaagttgattctcttgaattacaggaaacattg
ggatttgttgccagggcaccccgttgggcgacagcgttcaagtttccagcccaagaacag
atgaccatcgtacgtgatgttgaattccaagtagggcgtacaggcgctattacacctgtt
gcccgtttggaacctgtattagtggcaggtgttacggtcagtaatgccacattacacaat
gcagatgaaattgagcgtttaggcttgcgtattggtgatacggtggttattcgccgtgca
ggagacgttatcccgcaagtcgtgggtgttgttcatgagagtaggccaacagaaacacaa
gaagtaattttccccaaatattgtccggtttgtggttcagatatcgaacgcgtcgaaggt
gaagctgtggcccgttgtaccggtggcttattctgtggagcgcaacgcaaagaggcactg
aaacactttgtttcccgtcgtgctatggatgttgatggcatgggagaaaagatcattgag
cagctggtagataaagagtatgtcaaaacaccagccgatcttttccgtctgactgccgga
aaattaacgggacttgagcggatggggcctaaatctgcccaaaatgttattaatgcactg
gaaaaagcgaaaaaaaccacgtttgcccgctttatttattctttgggtatccgtgaagtt
ggtgaggctaccgcagtcaatttagtttcatattttggcacattggaaaagctgtgtgcg
gcgaatacagagtcattaattgaagtacaagatgtggggggcattgttgctagccatgtt
gttaatttctttggtgaaccacataatcaggtagtaattgacgatttggtcaataatata
ggtatccattgggaatcagaggaaggtccggatttagaagagattgatagtccattagta
ggtaaaatagtcgttttgacggggtcattaagtcgtttatccagagatgaagcgaaggat
aaactgacagccttaggagcaaaagtgacgggaagtgtctccaagaaaacggatttggta
atagcgggtgaagtggcgggctccaagctagctaaggccaatgaattagggatacctgtt
attgatgaagaagaaatgctccagttattgggcgaataa
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