Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00148
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Entry
AMD24_00148 CDS
T04108
Symbol
pdg
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMD24_00148 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00148 (pdg)
Enzymes [BR:
xii01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AMD24_00148 (pdg)
DNA repair and recombination proteins [BR:
xii03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AMD24_00148 (pdg)
Prokaryotic type
AMD24_00148 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
ALJ56343
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All DBs
Position
162292..163038
Genome browser
AA seq
248 aa
AA seq
DB search
MAMTQEERVFVLYQRLKTIYPKVYCTLAYCSPFELLVATILSAQCTDKQVNLVTPKLFEA
LHTVHAFAEISQGGLESLIRPTGFFRRKAKNIRNAARKILECHGGKVPKTLKALVTLPGV
GRKTANVVLGNAFRRNEGIAVDTHVARLSKRLELTPHVNPVKIEQDLMELLPRRHWSNLS
HRLILHGRRCCTARRPNCATCQLRDICPSAFSAPPIIRAKRAISFPGAQHSGPKLPLSQF
LYRAQHFF
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggctatgacacaggaggaacgggtttttgttctctatcaaaggctaaagacgatatac
cccaaggtgtactgcacattagcttactgctcacctttcgagttgttagtagccactatt
ctttccgctcaatgtacagataagcaggtaaacctggtaacaccaaaactttttgaggca
ctgcatacagtacacgcttttgcggagatctcccagggagggctggaatcactaatccgc
cccactgggttttttcgaagaaaagcaaaaaacatccgcaatgcagctagaaagattctg
gagtgtcacggtgggaaagtaccaaaaacacttaaagccttagtgactttaccaggagtg
ggccgaaagacagccaatgtagttcttggcaatgccttcagaagaaatgaaggcatagca
gtggatacccatgtggcgcgcctttcaaagcgcttggagctgactccacatgtgaacccg
gtaaaaatcgagcaagatcttatggagcttcttccgaggaggcattggagcaatcttagc
caccgactcatcttgcatggaagaagatgctgcacagcccgtaggcccaattgcgctacc
tgtcagctaagagacatctgccccagtgctttctcggctccacctataattagagcgaag
agagctatttcttttcctggagctcagcattcagggccgaaattacctctctctcaattt
ttgtatagagctcaacattttttctaa
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