Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00371
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Entry
AMD24_00371 CDS
T04108
Symbol
sucA
Name
(GenBank) 2-oxoglutarate dehydrogenase E1 component
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00020
Citrate cycle (TCA cycle)
xii00785
Lipoic acid metabolism
xii01100
Metabolic pathways
xii01110
Biosynthesis of secondary metabolites
xii01120
Microbial metabolism in diverse environments
xii01200
Carbon metabolism
xii01210
2-Oxocarboxylic acid metabolism
Module
xii_M00009
Citrate cycle (TCA cycle, Krebs cycle)
xii_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
AMD24_00371 (sucA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
AMD24_00371 (sucA)
Enzymes [BR:
xii01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
AMD24_00371 (sucA)
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Paralog
GFIT
Motif
Pfam:
E1_dh
Transket_pyr
OxoGdeHyase_C
2-oxogl_dehyd_N
Motif
Other DBs
NCBI-ProteinID:
ALJ56549
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All DBs
Position
complement(396787..399570)
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AA seq
927 aa
AA seq
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MNSCSFTARWNEALLDENYQKWQRSPCSVGSDWAAFFEGFELGTTQSAKNGAPTSPPGID
EQRVLQTKVDGIIHMYRVLGHSIAKLDPFSEPPPQQAQAAFALESLGFKASDLEREVSSH
LFRADKKFKLRELILVLERIYCSSLGAEFMHIQDACRRNWVSERLESEQGKEEAAVASHC
GSILRTLYKAETFEHFLHANYVGHKRFSLEGAESLLVSLQTLIDGCEERDIRQVVLGMTH
RGRLNVLANLLHKPLEAIFNEFDHNVLPKTEGSGGDVKYHLGYHTIWKGQTGHEVQIHLA
ANPSHLEAVSPIVQGRTRALQNISGDNQDGKGVLAILIHGDAAFAAQGVVAETFNLSQLP
GYQTEGTVHIIINNQIGFTTVPSDARSSRYCTDVAKMVEAPIFHVNGDDPLAVHTITRTA
LEFRQNFGKDVVIDIICFRRHGHNEADEPTFTQPSLYKKIKGHPLLSDTFLKKTEELGII
ESRQAVIWKDKEIERLEAALTQSRLKADDRRATSEKSGINNGPAAAAAIQPSSYSHRPVQ
TAIRSAMLDEIMQALTTVPEDFRVLPKVRRMLLERRRQIWQARGPYDWGIAEALAFGSLL
LEKIPVRLSGQDSQRGTFSHRHSILHDEITCERYIPLNHLSSSQAEFCVYNSPLSEYAVL
GFDYGYSMECPSALCLWEAQFGDFANGAQIIIDQFISSSEAKWHRQSSIVMLLPHGYEGQ
GPEHSSSRLERYLQLCAEENMQVCNPSTPAQYFHVLRRQIHGKYRKPLIVMTPKSLLRHE
QSVSKAQDFTNSRFFEILSNPLDHKQPEKIQRVVFCSGKVYYDLLQYRATHQLGELVVLI
RVEQLYPLDEEEVVRVFQRYPSTAQVIWCQEEPSNMGAWTFIYPQLRRLLGCEISYVGRP
ASASPATGFSFTHKKQQAELVKAAFGF
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaatagttgttcttttacggctcgttggaacgaggctttattggacgaaaattaccag
aaatggcagcggagcccttgctcagtaggctctgattgggccgctttttttgagggtttt
gagcttggtactacccagtcggcaaaaaatggagctcccacatcaccacctggcatcgac
gaacagagggtgttgcaaaccaaagtggacgggataatccatatgtaccgcgtgctgggg
cattctattgcaaaacttgaccccttttctgaacctccaccgcagcaagctcaggctgct
tttgctcttgagagcctcggctttaaagcgtctgatctagagagggaagtttcttctcat
ttattccgtgcagataagaaatttaagctccgcgaactgatcctagtacttgaacgcatt
tactgttcttccctcggcgcggaatttatgcatattcaggatgcgtgtcggagaaattgg
gtatcggaacgtctggaatcagaacagggaaaagaagaagccgcagttgcttcgcactgc
ggcagtattttgcgtactctctacaaagcggagactttcgagcacttcctacacgccaat
tatgtcggacacaaacgcttttctttggaaggtgctgagtccctccttgttagcttacag
actctcatagatggatgtgaggagcgtgacatcaggcaagttgttcttggaatgactcat
cgtggacgcttgaatgttttagccaatcttctccacaagccgttggaggcaatcttcaac
gaattcgatcacaatgtactgccgaaaaccgaggggagcggtggtgatgttaagtatcac
ctcggataccatacgatctggaaaggtcaaacaggccacgaagtgcagatccatcttgcc
gcaaacccgagccatttagaagcagtgagccctattgtgcaaggtagaacgcgagccctc
cagaatatctcgggtgataatcaggatgggaagggagttcttgctattttaatccacgga
gatgcagcgtttgcagctcagggagtggtggcagagacgtttaatctttcccagttacct
ggttaccaaacagaggggacggttcacattatcataaataaccaaatcggctttacgaca
gttccgtccgatgctcgttccagtagatactgcacagatgtagctaaaatggtcgaggcc
cctatctttcatgtcaacggggatgatccgttggcagtccatacgatcacaaggactgct
ttagagttccggcaaaattttgggaaagacgtagtgattgacatcatctgcttccgtcgt
cacggtcataacgaagcagacgaacctacttttactcagcctagtctttataagaagatt
aaaggtcatcccctcctaagtgacactttcctgaaaaagaccgaagagttgggaattatt
gaaagcagacaagccgtcatttggaaggacaaggagatagagaggctggaagcagccttg
acccagtctaggctgaaggctgatgaccgccgtgccactagtgaaaaatctgggattaat
aatgggcctgctgctgcagccgctattcagccttcttcttactcccatagacctgttcag
accgctattagatccgcgatgctggacgagattatgcaggcgctaactactgtcccagag
gattttcgtgtcctgccaaaggtccgccgcatgctactggaacgcagacggcagatctgg
caagccagaggtccctatgattgggggattgcggaggctcttgcttttggctcactcctg
ttggaaaagatacccgtaagactctcaggtcaggatagccaacgaggtacttttagtcac
cgccatagtatcctccacgatgagataacttgtgagcgctacattcccctaaaccatctc
tcatcctctcaggccgaattttgcgtctataacagcccactctctgaatatgctgtgttg
gggtttgactacggatactctatggagtgcccttccgcactatgtctttgggaggcccaa
ttcggagattttgctaatggtgcacagattatcatcgatcaatttatctcttcttctgag
gccaaatggcataggcagagctccatcgtaatgttacttccccatggctacgagggccaa
ggtccggaacactctagctccaggctggaacgctatctacagctctgcgcagaagaaaac
atgcaggtttgtaacccaagtacgccggcacagtactttcatgttttgcgccgtcagatc
cacgggaagtatcgcaaacccctgatcgttatgacacctaaaagccttttacgtcatgaa
caatccgtctcaaaagcccaagattttactaattcccgctttttcgaaatcctaagtaac
ccccttgatcacaaacaaccggagaagattcagcgggtagttttttgttctggaaaagtt
tactacgatctactccaataccgagcgacccaccaactaggagagctggtcgtgcttatt
cgggtcgaacaattgtatcctctggatgaagaggaggtcgtcagggtttttcaacgttat
ccctctaccgcgcaagttatctggtgtcaggaagaacccagtaacatgggagcgtggacg
tttatctatccacagcttcggaggttgcttggctgtgaaatttcctatgtcggccggcca
gccagcgcaagtccagctactgggtttagtttcacccataaaaagcagcaggctgaacta
gttaaggcagcgtttgggttttaa
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