Xanthomonas indica: Q7W82_14310
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Entry
Q7W82_14310 CDS
T10539
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xin Xanthomonas indica
Pathway
xin03030
DNA replication
xin03410
Base excision repair
xin03420
Nucleotide excision repair
xin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q7W82_14310 (ligA)
03410 Base excision repair
Q7W82_14310 (ligA)
03420 Nucleotide excision repair
Q7W82_14310 (ligA)
03430 Mismatch repair
Q7W82_14310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xin03032
]
Q7W82_14310 (ligA)
03400 DNA repair and recombination proteins [BR:
xin03400
]
Q7W82_14310 (ligA)
Enzymes [BR:
xin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q7W82_14310 (ligA)
DNA replication proteins [BR:
xin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q7W82_14310 (ligA)
DNA repair and recombination proteins [BR:
xin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q7W82_14310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q7W82_14310 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q7W82_14310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q7W82_14310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XCI79443
UniProt:
A0AAU8I238
LinkDB
All DBs
Position
complement(3297116..3299632)
Genome browser
AA seq
838 aa
AA seq
DB search
MTANSDPQQRAADLRQRIDDANHRYYVLDDASIPDAEYDALMRELEALEAAHPELAGADS
PTRKVGARPDGGFPEVRHAIPMLSLANAFETPGVDEDADDRTRFAEVADFERRIERELDL
AAPVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSLPLKLRDLGTP
PPAVLEVRGEIYMPRAAFAAWNAQALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFF
AYSVGEVRGLELPETHSQTLQLLRDYGFPVAPEADTATGFDGLIAYFRRIGAARDTLPYD
IDGVVYKLDDYDQQQAMGFVSRAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAVTPVARL
EPVQVAGVTVTNATLHNADQIARLDAREGDTVIVRRAGDVIPEVVRVIEERRPPGTVPWT
MPATCPVCGSELVKEEDAVAWRCSGGLACAAQRKEALRHFASRRALDIEGLGERQADALV
EFGFVQSLADLYALSVEDLVMMKAALDAATAADLLQAVEDSKGALALDAAGRAALDDEAT
QWRRADFLRTHMAVDLGGRLATKWAENLVAGIDASRATTLPRFLFALGIPHLGETTAKAL
AYWLGSLAFVRSTPAVLLQALPDIGGEVARSIATFFEQPGNAEVVDALIAAGIRFSDEGA
PPAELRERLDLAHLLGTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSTAGAA
NLAAYLADPAQTQALLEAEAAMRRLLDAAPAQTQRRAGPLDGQTVVLTGTLTALTRDEAK
AQLEALGAKVAGSVSKKTAFVVAGEAAGSKLDKAQELGVAVWDEAQLLAFLQSQGQGA
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgaattccgatccccagcagcgtgccgccgacttgcgccagcgcatcgacgac
gccaaccaccgctactacgtgctcgacgacgcgtcgattcccgatgccgagtacgacgcg
ctgatgcgcgagctggaggcgctggaggccgcgcacccggaactggccggcgcggattcg
ccgacgcgcaaggttggcgcgcggccggacggcggcttcccggaagtgcgccacgcgatc
ccgatgctgtcgctggccaacgccttcgaaaccccgggcgtggacgaggacgcagacgat
cgcacgcgcttcgccgaagtcgccgatttcgagcgccgcatcgagcgcgaactggatctg
gccgcgcccgtgttctcggtcgagccgaagctcgacggcctggcgatcagcctgcgctac
gaggacggcgtgttcgtgcagggcgccacccgcggcgacggcagcaccggcgaggacgtc
accgccaacctgcgccaggtgcgctcgttgccgctgaagctgcgcgacctcggcacgccg
ccgccggcggtgctggaggtgcgtggcgagatctacatgccgcgtgccgccttcgccgcg
tggaacgcgcaggcgctggagcgcaacgaaaagctgctggccaacccgcgcaacggcgcc
gccggctcgctgcgccagctcgatccggcggtcacccggcgccggccgctggcgttcttc
gcctattcggtgggcgaggtgcgtggcctggaactgccggaaacccattcgcagacgctg
cagctgttgcgtgactacggcttcccggtcgcgccggaggcggacaccgccaccggcttc
gacggcctgatcgcgtattttcgccgcatcggcgccgcccgcgacaccttgccgtacgac
atcgacggcgtggtctacaagctcgacgactacgaccagcaacaggcgatgggcttcgtc
tcgcgtgcgccgcgctgggcgctggcgcacaagttcccggcgcaggaacagtccaccgtg
ttgcgcgcgatcgaggtgcagatcggccgcaccggcgcggttaccccggtggcgcggctg
gagccggtgcaagtcgctggcgtcaccgtcaccaacgcgacgttgcacaacgccgaccag
atcgcgcggctggacgcgcgcgagggcgacacggtgatcgtgcgccgcgccggcgacgtg
atcccggaggtggtacgggtgatcgaggaacggcgtccgcccggcaccgtgccgtggacg
atgccggcgacgtgcccggtgtgcggctcggagctggtcaaggaagaggacgcggtggcc
tggcgctgcagcggcggcctggcctgcgccgcgcagcgcaaggaggccttgcgccacttc
gcctcgcgccgcgcgctggacatcgaaggcctgggcgagcgccaggccgacgccctggtc
gagttcggcttcgtgcagtcgctggccgacctgtacgcgttgagcgtggaggacctggtg
atgatgaaggcggcgctcgacgctgccacggctgccgacctgctgcaggcggtggaggac
agcaagggcgcactggcgctggacgcggccggccgcgccgcgttggacgacgaggccact
cagtggcggcgcgccgatttcctacgcacgcacatggcggtggacctgggcggcaggctg
gcgaccaagtgggccgagaacctggtcgccggcatcgacgccagccgcgccaccacgctg
ccgcgcttcctgttcgcgctgggcatcccgcacctgggcgaaaccacggccaaggcgctg
gcctactggctgggctcgctggcgttcgtgcgcagcaccccggcagtgctgttgcaggcc
ttgccggacatcggcggcgaggtggcgcgctcgattgcgacgttcttcgagcagcccggc
aatgcggaagtggtcgatgcgctgatcgccgccggcattcgcttctccgacgagggcgcg
ccgccggcggaattgcgcgagcggctggacctggcgcatctgctcggcacgctgccggtg
gacaagctcggcggcaagagcgcgcagcgcctggccgccacctacggcaccctggacgcg
ctgctgcgcgccaacgaaagcggctggaccggggccggcctgtccaccgccggtgccgcc
aacctggccgcgtacctggccgatccggcgcagacgcaggccttgctggaggccgaggcg
gcgatgcgacgcctgctcgatgccgcgccggcgcagacgcagcgccgcgccggtccgctg
gacgggcagaccgtggtcctgaccggcacgctgaccgcgctgacccgcgacgaggccaag
gcgcaactggaggcgctgggcgccaaggtggccggcagcgtgtcgaagaagacggcgttc
gtggttgccggcgaagccgccggctccaagctcgacaaggcgcaggaactgggcgtggcg
gtgtgggacgaggcgcagttgctggcgttcctgcagtcgcaggggcagggcgcatga
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integrated database retrieval system
