Xenopus laevis (African clawed frog): 108696323
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Entry
108696323 CDS
T01010
Symbol
kdm2a.L
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108696323 (kdm2a.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108696323 (kdm2a.L)
04121 Ubiquitin system [BR:
xla04121
]
108696323 (kdm2a.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108696323 (kdm2a.L)
Enzymes [BR:
xla01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108696323 (kdm2a.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108696323 (kdm2a.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108696323 (kdm2a.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108696323 (kdm2a.L)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108696323 (kdm2a.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
SR-25
PHD
LRR_At5g56370
C1_1
Radial_spoke
Cupin_1
Myc_N
Motif
Other DBs
NCBI-GeneID:
108696323
NCBI-ProteinID:
XP_018081069
Xenbase:
XB-GENE-17331848
UniProt:
A0A8J0TAI7
LinkDB
All DBs
Position
7L:complement(63126122..63247292)
Genome browser
AA seq
1184 aa
AA seq
DB search
MEEEQLRYSRRLRHTLRRRYEDDGISDDEIEGKRTFNLEEKLRSNKYNANFITYMDGKGQ
TLKLWAAAVLRKILVSLHSRLDILCFCFLDFNMKFIQEGGLRDPIIFASSEGLGIKMPDS
NFTVNDVKMFVGSRRIVDVMDVGTQKGTEMTMAQWAKYYETPEEEREKLYNVISLEFSHT
KLENLVQRPTTVDQIDWVDNIWPRHLKDKQTESTNVIQEMQYPKVQKYCLMSVRGCYTDF
HVDFGGTSVWYHILRGGKVFWLIPPTDQNLELYENWLLSGKQGDVFLGDRVTECQRIELK
QGYTFVIPSGWIHAVYTPQDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPTKFRYPFYYE
MCWYVLERYVYCMTRRSHLTKEFQRESLSIDLELNGRQRPDTPSSSSSSSSSSGLSSSSD
NDDSSDQDWEEKEGFKKRERDRGGVERKLQKRRNRDKRQRDQERDRHRRTERIIIHTLPA
SLRPLTPPPSLPLPAPDSPPSTSPYLTCFEVEGLRCLVMKLESLPPHKKCLPDGIHDPEA
LISDIKGLLEDHTHDPPELALTGVPIVHWPKRSQFKVHPRPKIQFTKPHTMRPASRHSTA
PPRTSGTPSGTTASSGARRRRVRCRKCQACVQRECGTCHYCKDMKKFGGPGRMKQSCVLR
QCLAPRLPHSVTCALCGEVDQTNDTQDFERKLMECSVCNEIVHPGCLEMDGEGLLSDELP
NYWECPKCYEGQKHTVEPNHDHILLHSKRKAADNYESSHYFPAKVLRPPLGQSPPSPPLL
LLPPSPSSAPPTPPSSQTQVPPASREERAKRRQLAREKENHPTGCDQSEGDRLRLRGPYL
TVTLQRPPKELSSSSIVPKLQAITPNPRQHIRAVSLQHHDEEREEEEEEEEEEEEEEEET
ENSVMLGQRKDNISMQKDVWLSVFHYLSHEELCICMRVCKSWYKWGCDKRLWSRIDVSRC
KSLVPQALSGIIKRQPVYLDLSWTTVSKKQLIWLINRLPGLKDLILAGCTWSAVSALASC
SCPLLRTLDLRWTVGIKDTQIRDLLTPVSDKAGHDSRSKLRLLTDLRLSGLDISDVTLRL
IIRHCPLLSKLDLSHCPLLSDQSVNLLTAVGSSTRGTLTHIHLAGCKGVTDDSLLYLRRA
INLSLIDLRGCKQVTRGACEGFISDLSVSVLYCLSDDKLIQRIS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagcaactgcgatacagccgcagattgaggcatacactacgtcgccgttat
gaagatgatggaatatctgatgatgagattgaaggaaaaagaacttttaatttggaggaa
aaattgagaagcaacaagtacaatgctaactttattacctatatggatggcaaaggtcag
actcttaaactatgggcagctgcagtgctgaggaaaattttggtatctttgcattcacgc
ttagatatattgtgtttttgttttctagattttaacatgaaattcattcaagaaggagga
ctcagggatccaatcatttttgcaagttccgaaggacttggcatcaaaatgcctgattct
aactttactgtgaatgatgtcaagatgtttgttgggagtaggcgtattgtagatgttatg
gatgtcgggactcagaaaggcacagagatgacaatggcacaatgggcaaaatactatgag
actcctgaagaagaaagagaaaaactatataatgtgatcagcctggagtttagccacact
aaactggagaatctggtgcagaggccaacaacggttgatcagattgattgggttgataac
atctggccaagacatctaaaggacaagcagactgaatccacaaatgtaattcaggagatg
caatatcccaaagtacaaaagtattgcctcatgagtgttcgtggatgttatacagatttt
catgtggactttggtggcacatcggtttggtaccacatattgagaggaggcaaggtcttt
tggctaatacctcctacagatcaaaatctggaactgtatgagaattggctgctctctgga
aaacaaggtgacgtctttcttggggatagagtgacagagtgtcagcgtattgaactaaaa
caaggctacacatttgttattccctcagggtggattcatgctgtgtacacacctcaggac
acactggtgtttgggggcaatttcctgcacagcttcaacataccaatgcaacttcgtatt
tatagcatcgaggacaggacaagagtacctacaaagttccgatatcctttttattatgaa
atgtgttggtatgtgcttgaaagatatgtctattgcatgactcgacgctctcatctcaca
aaggagttccaaagggagtctctgagcattgatttagaacttaacggacgccaaagacca
gacactccatcatcatcatcttcatcatcatcttcctctggattatcgtcttcctctgat
aatgatgattcctctgatcaagattgggaggaaaaggaaggttttaagaaaagggaaaga
gatagaggtggagtggagcgtaaacttcagaagagaaggaacagggataagcgacaaaga
gaccaagaaagagatcgacatcggcgtactgagaggataattatccatactctgcctgct
tcactacgtcctttgaccccaccaccttctcttccattgccagcaccagattcacctccc
agcacttctccttacctgacctgttttgaggttgaaggattacgctgtctggtgatgaaa
cttgaatccttaccaccacataaaaagtgcctaccagatggtatccatgaccctgaagct
cttatctctgatatcaagggacttcttgaggaccacactcatgatccacctgaacttgca
ctcactggagttccaatagttcattggcccaagagaagtcagtttaaggtccaccctcgg
cccaagattcagtttacaaaacctcacaccatgcgtccagcttcccgtcactcaacagct
ccacctcggacatcaggcacaccatcaggtactacagcttcttctggggctcgaaggcgt
cgtgtcaggtgtcgcaaatgtcaagcttgtgtccagagagagtgtgggacttgccattac
tgtaaggatatgaagaagtttggagggccaggccgtatgaaacaatcttgtgtactgagg
cagtgccttgcgcccagactgccccattcagtgacctgtgctttgtgtggggaggtggat
caaacaaatgacacacaggattttgaaagaaagctaatggagtgttcagtttgcaatgag
attgttcatccaggatgcctagagatggatggtgaaggacttctaagtgatgaacttcca
aactactgggagtgtcccaaatgttatgagggacagaagcacacggtggaaccaaatcac
gatcacatcttactgcacagtaaacgtaaagctgctgacaactacgagagcagccattac
ttccctgccaaagttttgcggcctccactggggcagagccccccatccccaccgcttctt
ttgctccctccttctccttcatctgctccacccacaccaccctcttctcagacacaagtc
ccacctgcaagccgagaagagcgagcaaagaggcgtcagcttgctagagagaaagagaac
cacccaactggatgtgatcagtctgaaggagatcgtttgcggcttagggggccctacctc
actgtcactcttcagcgtccaccaaaagaattaagctccagttccattgtccccaagtta
caagccatcacaccaaatccacgtcagcatatacgtgcagtatctctacagcatcatgat
gaggaacgagaagaagaagaagaggaagaggaggaggaggaggaagaggaagaagagacc
gagaatagtgtaatgctgggtcaaagaaaagacaacatatcaatgcagaaggatgtttgg
ctctctgttttccattacctctcacacgaagagctttgcatctgtatgagagtgtgcaaa
tcttggtacaaatggggctgtgacaaacgtctctggtccaggattgatgttagtcgttgc
aagtctctagtaccacaggcactcagtggtattattaaacgacaacctgtataccttgac
ttgagctggacaactgtgtcaaagaagcaacttatatggcttatcaaccggttgccaggt
ctgaaggatttaatccttgctggttgcacttggtctgctgtctctgcccttgctagctgt
agctgtcccctcctgcgtactctggacctgcgctggactgttggaatcaaagatacacag
attagagatttgcttacaccagtctcagacaaagcaggacacgactctcgcagcaagcta
cgtttgctaacggatctgcgcctgtctggccttgatatttctgatgttactttaagatta
ataatacgccattgcccacttctatctaagcttgacctcagccactgtccactgctttct
gatcagtctgtaaacctccttacagctgtgggctcttctacaaggggaacactcactcac
atacacttagcaggttgtaaaggggtgacagatgactctcttctatatctacgacgggcc
attaacctgtcccttatcgacttgcgtggttgcaaacaggttactcggggagcttgtgag
ggatttatttcagacctctctgtgagcgtcttgtattgtctgtcagatgataaacttatc
cagaggatcagctag
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integrated database retrieval system
