KEGG   Xenopus laevis (African clawed frog): 108697303
Entry
108697303         CDS       T01010                                 
Symbol
smndc1.S
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108697303 (smndc1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    108697303 (smndc1.S)
Spliceosome [BR:xla03041]
 Complex A
  U2 snRNP components
   U2 related factors
    108697303 (smndc1.S)
 Complex B
    108697303 (smndc1.S)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    108697303 (smndc1.S)
SSDB
Motif
Pfam: SMN_Tudor TUDOR SH3_AtC3H22 PUA_4 F420_oxidored TraX-like
Other DBs
NCBI-GeneID: 108697303
NCBI-ProteinID: XP_018082710
Xenbase: XB-GENE-6486006
UniProt: A0A8J0T5B9
LinkDB
Position
7S:1313989..1322448
AA seq 257 aa
MRRRAARLHLLIPVAGSLQMAEALAKQLAGYKAQLQQVESVITANGKNDDLLKLKKDLQE
VIELTKDLLSSQPSEVTDDSCDVAFTSGNQWWKVGERCMAIWSDDGQWYEAEIEEIDEEN
GTAAITFAGYGNAEVTSLLNLRPVELGRKAKEDSGNLPMSKKEMIAAQREHKKKKALKKV
QRIKELEQEREDQKVKWQHFNNKAYSKNKKGQVKRSIFASPVSVMGKVGVGTCGIADKPM
TQYHDTSKYNVRHLMPQ
NT seq 774 nt   +upstreamnt  +downstreamnt
atgagacgtagagcggcgcggctccacctcctcattcctgttgctggttccttgcagatg
gcagaagctctggctaagcagctggcgggttacaaagcccaactgcaacaggttgaatcg
gtgataacggccaacggcaagaatgacgatttactgaaactaaagaaagatttgcaggaa
gtgatagaattaaccaaagatcttctatcgtcacaaccctcggaagtgacggacgattcc
tgtgacgtcgcattcaccagcggaaaccagtggtggaaggttggagagaggtgtatggcg
atctggagtgatgacggacagtggtacgaggccgagatcgaggaaatagacgaagagaac
gggactgcggccataacctttgccggctacggcaatgcggaagtaacgtctttgctcaat
ctgaggccagttgagttggggaggaaagccaaagaggacagcgggaatctgcctatgtct
aagaaagagatgatcgctgcacagagagaacataaaaagaagaaagcactgaagaaagtc
cagagaataaaggagctggaacaggagagggaagaccagaaggtgaaatggcagcacttc
aataacaaggcctactccaaaaacaagaaaggccaggtcaagagaagtatctttgcctct
cccgtgagtgtgatggggaaggtgggcgtgggtacgtgtggcattgcagataaacccatg
acacagtatcacgatacttccaaatacaacgttcggcatctcatgccccagtga

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