Xenopus laevis (African clawed frog): 108700844
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Entry
108700844 CDS
T01010
Symbol
eftud2.L
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108700844 (eftud2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108700844 (eftud2.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108700844 (eftud2.L)
Complex C
U5 SnRNP specific factors
108700844 (eftud2.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
108700844
NCBI-ProteinID:
XP_018090325
Xenbase:
XB-GENE-17338277
UniProt:
A0A1L8ESA5
A0A974BWS6
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All DBs
Position
9_10L:complement(5603539..5628172)
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AA seq
974 aa
AA seq
DB search
MDTELYDEFGNYVGPELDSDDENDDDDMGRDDRDVDVAEDEDDEEYMGDPDDERGGMEVV
LHEDKKYYPTAEEIYGPEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPATVYEMDF
LADLMDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRHDQDLCYTDILFTEQERG
VGMKSTPVTIVLPDTKEKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLN
TERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSVYSTDENL
ILSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTK
KAPTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPQTLEELGIHLTKEELKLNIRPLLRL
VCNRFFGEFTGFVDMCVQHIPSPKAGARAKIEHTYTGGIDSELGEVMSECDPDGPLMCHT
TKMYSTDDGVQFRAFGRLLSGTIHAGQPVKVLGENYTLEDEEDSQVCTIGRLWVSVARYH
IEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPS
ELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADP
VVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFF
QTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLSSVKDSIVQGFQWGTREGP
LCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQA
PADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAVDSFGFETDLRTHTQGQAFSL
SVFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPML
LELAKQDVVLNYPM
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggacactgaattgtacgatgagtttggtaactacgtcgggcctgaattagattcggat
gatgaaaatgatgacgacgacatggggagagatgacagggatgtggatgtggcagaagat
gaggatgatgaggaatatatgggggatcctgatgatgaacgcggcggaatggaggttgtg
ctgcatgaagataaaaaatattatcccaccgcggaggagatttatggcccagaggtggaa
accattgtgcaagaggaagacacccaaccacttactgagccaattattaaaccggtgaag
gctaaaaagttttcgatgatggagcagggactgccggcaactgtttatgagatggacttc
ctcgcagatctaatggacaatcctgaactgattcggaatgtgactctttgtggccacctg
catcatggaaagacctgttttgttgactgtttaattgagcaaacacaccctgaaatccgc
aagcgccatgaccaagatctttgctacacagatattctatttactgagcaggagagagga
gttggtatgaagagcacccctgttacaattgtgcttccagacaccaaggagaaatcttac
ctgttcaatattatggacacaccaggtcatgttaacttttcagatgaagttacagctgga
ttgcgcatctctgatggagtagtgctgtttattgatgctgctgagggggttatgctgaac
acagagagactgattaagcatgctgttcaggaacgtctggccgtcactgtctgcatcaac
aagatagacagactgattctcgagctcaagctgcctcccacggacgcctattacaaactg
cggcacattgtggatgaagtgaacgggctgctgagcgtgtattccacagacgagaacctg
attctctcacctctcctgggaaacgtctgtttcgctagctcgcagtacagtatctgcttt
acactgggctcttttgccaaaatttatgctgacacatatggggacattaactaccaggag
tttgcaaagcgattgtggggcgacatctacttcaatcctaaaacccgcaagttcaccaag
aaagctcctacaagcagctcgcagcgcagttttgtggagtttgtcctggaacctctctat
aagattctggctcaggtggtcggtgatgtagacacaactctgcctcagactctcgaggag
ctgggaattcatctgaccaaagaggaactgaaactgaacatccgtcctctcctgaggctt
gtctgtaaccgcttctttggggaattcactggtttcgtggatatgtgcgtccagcacatc
ccttctcccaaagcgggagcaagagccaagattgaacacacctacacagggggcattgat
tccgaactgggggaggtgatgagcgaatgtgacccagatggcccacttatgtgtcatacc
accaagatgtatagcacagatgatggggtgcagttccgtgcatttgggaggttacttagc
ggaacaatccatgctggacaaccagtcaaagttctgggagagaactatacgctggaggat
gaagaggactcacaagtctgcacaatagggaggctgtgggtgtctgtagctaggtatcac
attgaagtgaacagagttccagctggaaactgggtgttgatagagggtgtggaccagcct
attgtgaagacggcaaccatcacagagccacggggcaatgaggaggctcagatcttccga
ccactgaagttcaacacaacgtctgtcattaaaattgctgtggaacccgtcaacccctca
gaattgcccaagatgttggatgggttgaggaaggtgaacaagagctacccttccctcacc
accaaggtggaggagtccggggagcatgtgatccttggcaccggagagctgtatctggac
tgtgtcatgcacgacctccgcaagatgtactccgagatcgacattaaggtggcggatccc
gtggttaccttctgcgagactgtagtggaaacctcatcattgaagtgttttgctgagaca
ccaaacaagaaaaacaagatcacaatgatcgcggagccgctggaaaagggattggctgag
gacatagaaaatgaagtggtgcagatttcctggaacaggaagaagctgggagagtttttc
cagaccaagtatgactgggatctgctcgctgctcgttctatttgggcttttggaccagac
accacagggccaaacattttagttgatgacactctcccctctgaggtggataaggctctg
ctgagttcagtgaaagacagcattgtgcagggattccagtggggtacaagagagggtcca
ctgtgtgatgagctgatccgcaatgtcaaatttaagatcttggatgccgttatcgcacag
gagcccctacaccgtggtggggggcagatcatccctacagcccgaagagtggtttactcc
gccttcctgatggctactccccgtctaatggagccctattattttgtggaagtacaagcc
cctgcagactgtgtctctgctgtttacactgttttggcccgaagaagagggcacgtaact
caggacgccccaattcccggatcacctctctacacgatcaaagctttcatcccagcagtc
gattcatttgggtttgagactgacctgcgaacacacacccagggacaagccttctctttg
tctgtcttccatcactggcagattgttcctggagaccctctggataaaagcatcattata
cggcccctggaaccacaaccagcccctcaccttgccagagagtttatgataaagacaagg
cgtaggaaggggctgagcgaggatgtgagtatcagcaaatttttcgatgaccctatgttg
ctggaactggcgaaacaggacgtggtgctgaattaccccatgtga
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