Xenopus laevis (African clawed frog): 108714652
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Entry
108714652 CDS
T01010
Symbol
lsm3.L
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108714652 (lsm3.L)
09123 Folding, sorting and degradation
03018 RNA degradation
108714652 (lsm3.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108714652 (lsm3.L)
03041 Spliceosome [BR:
xla03041
]
108714652 (lsm3.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108714652 (lsm3.L)
mRNA degradation factors
5'-3' decay
Lsm complex
108714652 (lsm3.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108714652 (lsm3.L)
Complex C
U2 snRNP components
108714652 (lsm3.L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Motif
Other DBs
NCBI-GeneID:
108714652
NCBI-ProteinID:
XP_018114552
Xenbase:
XB-GENE-17339515
UniProt:
A0A974HQ38
A0A1L8GPJ8
LinkDB
All DBs
Position
4L:complement(132484895..132495089)
Genome browser
AA seq
102 aa
AA seq
DB search
MADDGEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacggggagcagcaacaaactactaatacagtggaggagcctctggatcta
atcagacttagcctcgatgaacggatctatgttaagatgaggaatgaccgagagctgcgt
ggccgtttacacgcatatgatcagcatttgaacatgatcctgggagatgtggaggagacc
gtgacaactatagagattgatgaggagacgtacgaggagatttacaaatccacaaagcga
aacatcccaatgctgtttgtgagaggcgatggtgtggttcttgtcgctcctcctttgaga
gttggttga
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integrated database retrieval system
