Xenopus laevis (African clawed frog): 108717273
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Entry
108717273 CDS
T01010
Symbol
otof.L
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108717273 (otof.L)
Membrane trafficking [BR:
xla04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108717273 (otof.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
108717273
NCBI-ProteinID:
XP_041419575
Xenbase:
XB-GENE-6488286
UniProt:
A0A8J1KQJ0
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Position
5L:complement(168349518..168446437)
Genome browser
AA seq
2018 aa
AA seq
DB search
MALIVHLRTVTELRGRGDRIAKVTFRGQSFYTRVLENCEDEAHIDETFRWPIASNIDGNE
MLEIQVFNYSKVFTNRLIGTFRMVLQQVVEEAQLEVTDTLIDDNNSAIRTSVSIEIRYQT
MDGSVGAWNDGEFMDNSNLHNETVGNFQFETESLLSGQSQNSAVSPGRSQSLHSGERAFR
RVGKGVFSAMKLGKMRPPKDESRRQDEPAVLETEDLDRKAIRLAGGLDPDTISLASVTAL
TTNVSNKRAKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDEKKYTSMK
ESTNCPYYNEYFVFDFHVPPDVMFDKIIKLSVIHSKNLLRSGTLVGSFKLDVGTVYTQPE
HQFYHKWALLSDPDDITAGLKGYLKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPDG
VPAERQWARFYVKIYRAEGLPRMNTSIMANVKKALIGENKDLVDPYVQVFFAGQKGKTSV
QKSSYEPMWNEQIIFTEMFPPLCKRMKIQIRDSDKVNDVAIGTHFIDLRKISNEGDKGFL
PTLGPAWANMYGSTRNYTLMDEHQDLNEGLGEGVSFRSRLLLSLAVEILDTSNPELTSST
EVQVEGAQPVAENCTGKMEEFFLFGAFLESTMIDRKNGDKPINFEVTIGNYGNEIDGVSK
PMRKRKEGGNGVEDETELLQNSSDDEADEDGEVLSISSTPAMKPLITDRNYFHLPFFDKK
PCIYIKSWWQDQRRRLYNANIMDKIADKLEEGLNDVHEMIKTEKPYPERRLRGVLEELSS
SCFRFVTLANKDQNQNGQTKLDRERLKSCMRELENMGTQAKTMRSQVKKNTIKEKLKLVQ
NFLQKLRFLADEPQHSIPDIFIWMMSNNKRIAYARIPSKDILYSIVDEETGKDCGKVKCV
FLKLPGKRGFGPAGWTVQAKMEVYMWLGLSKQRRDFLCGLPCGFEEIKAVKGPGLQSFPP
ISLNYTKKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFNTQSQCTEVLNETLCPTWDQ
LLVFDNIELYGEAHEMRDDPPIIVIEIYDQDTVGKADFMGRTFAKPVVKMADERYCSPRF
PPQLEYYQIYRGNSTAGDLLGAFELLQIGPAGKSDLPQIEGPTDMDRGPILPVPLGIRPV
LSKYRVEVLFWGLRDLKRVNLSQVDRPRVDIECAGKGVQSALIQNYKKNPNFSTLVKWFE
VDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDKNSQHWNTAAKLMN
GYLAMTNGGPHSRTTGEIVINMEPEAPVKKMETMVKLEANSDAVVKVDVGEEEKDKKKKK
KKKGVEEIEEEEPDESMLDWWSKYFASIETMKEQLRQQEAAAAEAEEKEEMEIAEEIKTD
DSPMKGNKGSTKNKEKVKAPKEEKKNKKQQQQQQAEQAEKKNKQKIDELKVYNKELENEY
DNFEDWLHTFNLLRGKIGDDDDTVSEEERIVGRFKGSMCVYKVPLPEDVTKEAGFDPNFG
MFQGIPNNDPMNVLVRVYVVRATDLHPADINGKADPYIVIKLGKTEMKDKENYISKQLNP
VFGKSFDIEATFPMESMLTVAIYDWDLVGTDDLIGETKVDLENRYYSKHRATCGISHTYA
IHGYNMWRDPMKPTQILSRLCKEGKIDGPHYGPGGRVKVTNRVFTGPTEIEDDNGQKKQT
DEHLALSVLQHWEDIPRVGCKLVPEHVETRPLLNPDKPGIEQGRIEMWVDMFPMDMPAPG
PAIDIAPRKPKSFELRVIIWNTDEVILEDDAFMTGEKMSDIYVKGWLKGQQEDKQDTDVH
YHSLTGEGNFNWRFLYPFDYLMAEEKIVISKKESMFSWDETEYKIPARLTLQVWDADHFS
ADDFLGAIELDLNRFPRGAKTAKQCSIEMAEPDVDLPMVSIFKQKRVKGWWPFVARNEND
EMELTGKVEAELHLLTAEEAEKTPVGLGRNEPDPLEKPNRPDTSFIWFLNPLKSIRYFIW
HTYRWLIVKILILILLLLMVGLFLYSLPGYLVKKILGA
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atggccctcattgtgcatctcaggactgtgaccgagctgcgggggagaggggacagaatt
gctaaagtcacgttcagagggcagtcgttctacactcgggtgctggagaactgcgaggat
gaggcccacattgatgagactttccgatggccaatcgccagtaacatcgacggaaacgaa
atgctggagatccaagtgtttaactacagcaaagtcttcactaacaggctgatcgggacg
ttccggatggttctgcagcaggtggtggaggaggcgcagctggaagtgaccgacaccctc
attgatgacaataattcagcaattcgaacgagcgtcagcatcgagatccggtaccagacc
atggacggttctgttggcgcctggaacgatggagaatttatggacaattccaacctgcac
aacgagacagtcgggaactttcaatttgagacagagagtttgctgtctggccagagtcag
aactcagccgtgtcccccgggagatcacagagcttgcactctggggagagagcctttagg
agagttggcaaaggggtattttcagccatgaagcttggaaagatgcgcccacccaaggac
gagagcaggaggcaagatgaacctgctgttctggagacagaagacttggacaggaaagcg
atcagactggcgggaggcctggaccctgacaccatatctctcgcctccgttacagccctc
accaccaatgtgtccaataaaagggccaaacctgatatcaaaatggagccaagtgctgga
aggccaatggattaccaagtgagcatcacagtgatagaagcccggcagctggtgggatta
aatatggatccggtggtgtgcgtagaggtgggagatgagaaaaagtacacgtccatgaaa
gaatccaccaactgcccctactacaatgagtactttgtcttcgatttccatgtgccaccg
gacgtgatgtttgacaagataatcaaactgtcagtgatccattccaagaatctcctccgg
agtgggaccttggtgggctcctttaagctggacgttggcactgtgtatacacaacctgag
caccagttctaccacaagtgggcgcttctctcagaccctgatgacatcacggcggggctt
aaaggttacttgaagtgtgacatcgccgtggtcggaaagggggacaacattaagaccccg
cacaaagccaatgagacggatgaggatgatattgaagggaacttgctcctcccggatgga
gttcccgcagaacgacagtgggctcgattctacgtcaagatctaccgcgctgaaggcttg
cccaggatgaacaccagcatcatggccaacgtcaagaaagctctcattggagaaaacaaa
gacctggtggacccctacgtgcaagttttctttgcaggacaaaagggtaagacctcggtg
cagaagagcagctacgagcccatgtggaatgagcagatcattttcacagagatgttccct
cccttgtgcaagaggatgaaaatacagatcagagactcagacaaggtcaatgatgtcgcc
atcgggacccactttattgacctgaggaaaatttccaatgagggagacaagggtttcctt
cccactcttggcccagcctgggcaaatatgtacggctccacccggaactacacactcatg
gatgagcatcaagatctaaacgaggggcttggagaaggtgtctctttccgttcaaggctg
ttgttgagtctcgctgttgagatattagatacaagcaatccagagctcaccagttccacc
gaagttcaggttgaaggagctcaaccagtggcagaaaactgcacaggtaaaatggaagag
tttttcctgtttggagctttcctggaatccaccatgattgatcggaaaaatggggacaag
ccaattaactttgaggtcaccataggcaactatggcaatgaaatagatggagtctccaag
ccaatgaggaagaggaaggaagggggcaatggagttgaggatgagacagagctcttgcag
aattccagcgatgatgaggcagatgaagatggagaagtgctatcaatctcttcgactccc
gcaatgaagccactcataactgataggaactacttccatctgccgttctttgataagaag
ccctgtatctacattaagagctggtggcaggaccagcggaggaggctgtacaatgccaac
attatggacaagattgcagataagctggaggaagggttgaatgacgtccatgagatgatc
aagacggaaaagccttaccctgagcggcgtctccgaggggtcctggaggaactcagtagc
agctgtttccgatttgtcaccttggccaacaaagatcagaaccagaatggacagactaaa
ctggacagggagaggttgaagtcctgcatgcgggagctggagaacatggggacacaagcc
aagaccatgaggtcccaagtgaagaagaacacgattaaagaaaaactgaaactggtgcag
aatttcctgcagaagctccgtttcctggcagatgagccccaacacagtattcctgacatt
ttcatctggatgatgtccaacaacaagcgcattgcatatgcccgcatcccctccaaagac
atcctctactccattgtagatgaggagaccggaaaggactgtgggaaagtcaagtgcgtc
ttccttaagctgcctggcaagaggggctttgggcctgcaggttggacagtacaagctaag
atggaagtctacatgtggttgggcctgagcaagcaacgcagggatttcttgtgtggtctt
ccttgtggatttgaggagataaaagcagtgaaagggcccggcctgcagtccttcccaccc
atcagccttaactacaccaaaaaacaagtgttccagttacgagcccacatgtaccaagcc
cggagtttgtttgctgccgacagcagtgggctctccgacccgtttgcccgcgttttcttc
aacactcagagccagtgcacagaggtgctgaacgagaccctttgtcccacttgggaccag
ttgttggtgtttgacaatatcgagctctacggagaagctcacgagatgcgagatgatcct
cccatcatcgtcattgaaatttatgatcaagatacagtagggaaggctgatttcatgggg
agaacgtttgccaaacctgtcgtgaaaatggccgatgagcgatactgctctccacgcttt
ccaccgcaattggaatactaccagatatatcgagggaactcaaccgcaggagacctcttg
ggagcattcgaactgctccagattggaccagcaggcaagtctgaccttccacagattgaa
ggaccaacagacatggacagaggacccatcctaccagttcctcttggaatcagaccagtg
ctcagcaaatacagagtagaggtccttttctgggggctgagagaccttaagagagttaat
ctatcccaggtagatagaccaagggtggatattgagtgtgccggaaagggggtgcaatct
gctctcatacagaactacaagaaaaatccaaatttcagcaccttggtcaaatggtttgaa
gtggatctccctgagaacgagttactgcacccgccactaaatatccgagtcgtagactgc
agagcctttggcagatacactctcgttggttctcatgctgtcagctccttacgcaggttc
atctaccggcctccagataagaattcccagcattggaacacagcagctaaactcatgaat
ggctacttggcaatgacaaacggagggccccactctcgcaccacaggtgaaatagttatc
aacatggagccggaagcgcccgtcaagaagatggagacaatggtgaaactagaagctaac
tccgatgcggtggttaaagtagacgtgggtgaggaagaaaaagacaagaaaaagaagaag
aagaagaaaggagttgaggagattgaggaagaggagccagatgagagcatgttggactgg
tggtccaaatactttgcttccattgaaactatgaaggagcaactgcgacaacaggaagcg
gccgctgcagaggccgaggagaaggaggagatggagatcgcagaggagatcaaaactgat
gactctcccatgaaaggcaacaagggctctaccaagaataaggagaaggtcaaagctccc
aaagaagagaagaagaacaagaagcagcagcagcagcaacaagctgagcaggctgagaag
aagaacaagcagaaaatcgacgagctaaaggtgtacaataaggagttggagaatgagtat
gataactttgaggattggctccatacattcaacttgttacgagggaagatcggcgatgat
gatgatactgtaagcgaagaagagagaatcgttgggaggtttaaaggatccatgtgtgtt
tacaaagttccattgccagaagacgtcacaaaggaagccggatttgacccaaactttggc
atgtttcagggcatccctaacaatgacccaatgaatgtgttggtcagagtttatgttgtg
agagccactgatcttcatcccgctgatatcaatggaaaagcggatccatatattgtcata
aaacttggaaaaactgagatgaaagataaggaaaactacatctccaagcagctaaaccca
gtctttggaaagtcctttgatattgaggccactttcccaatggagtcgatgctaacagtc
gctatttatgactgggatctggtgggaacagatgatctgatcggtgaaaccaaagtcgac
ctggaaaaccgttactacagcaaacacagggcgacttgtggtatctcacacacctatgct
attcatgggtacaacatgtggagggacccaatgaagcctacacaaatcttatctagactt
tgcaaagaagggaagatcgatgggccccattatggccccggtggaagagtgaaagtcaca
aatcgggtattcacaggtcccacagaaattgaagatgataatggtcagaagaaacagaca
gatgaacaccttgccctctcggtccttcagcactgggaggacattcctcgggtgggatgt
aagctggtccctgaacacgtagaaacgcggcctttgttaaacccagacaaacctggaatt
gagcagggccgcattgaaatgtgggtagacatgttcccaatggacatgcccgcgccaggt
cccgccatagatattgctccaagaaagccgaaaagttttgagctacgtgttattatttgg
aacactgatgaagtgattctagaagatgatgctttcatgacaggagagaagatgtctgac
atctatgtcaaggggtggctgaaaggacagcaggaagacaaacaagacacggatgtccac
tatcattcccttactggggagggcaacttcaactggaggttcttgtacccttttgattac
cttatggcagaggagaagattgtcatctccaagaaagagtccatgttctcttgggatgag
acagagtataaaatcccggctcgtcttacactccaagtctgggatgctgaccacttctca
gcagatgactttcttggagccatagaattggacttgaatcggtttcctcgcggggcaaaa
acagcgaaacagtgttcaatagaaatggcggaaccagatgtcgatctgccaatggtttca
atcttcaaacaaaagagggtgaagggatggtggcctttcgtggccaggaatgaaaatgat
gagatggagctgactggtaaagtggaggcagagcttcaccttctcacagcagaggaggca
gagaagacccctgtaggacttgggcgtaatgagccagatccccttgaaaaaccaaaccga
ccagatacaagtttcatctggtttctgaaccccctgaagtctatccgctatttcatctgg
cacacttaccgctggttgatcgtgaaaatcctcatcctcatcctccttctcctcatggtg
gggcttttcctttactctttgcctggatacctggtaaagaagatcctgggagcctga
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integrated database retrieval system
