Xenopus laevis (African clawed frog): 444267
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Entry
444267 CDS
T01010
Symbol
kdm2b.L
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
444267 (kdm2b.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
444267 (kdm2b.L)
04121 Ubiquitin system [BR:
xla04121
]
444267 (kdm2b.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
444267 (kdm2b.L)
Enzymes [BR:
xla01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
444267 (kdm2b.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
444267 (kdm2b.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
444267 (kdm2b.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
444267 (kdm2b.L)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
444267 (kdm2b.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_At1g61320_AtMIF1
Cupin_1
LRR_4
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
444267
NCBI-ProteinID:
XP_018118737
Xenbase:
XB-GENE-990512
UniProt:
A0A8J0VAU3
LinkDB
All DBs
Position
1L:176110889..176177003
Genome browser
AA seq
1259 aa
AA seq
DB search
MEAKKDSARRLRSIDRTRYAEHEDLSDVEDMVSIRGFSLEQKVSCNAYRGNFVRYMEGKD
FTYEYVQREALQTPLLFSTKEGLGIKMPEQDFTVRDVKLLVGSRRVVDVMDVNTQKSIDM
SMSQFVRYYETPEMEREKLYNVISLEFSHTKLERVVKRPTVVDAVDWVDNMWPRHLKEQQ
KESTNVIAEMKYPKVKKYCLMSVKGCYTDFHIDFGGTSVWYHVFRGGKVFWLIPPTGHNL
QLYEEWLLSGKQTDIFLGDRSEGCQRIELKQGQTFFIPSGWIHAVYTPADSLVFGGNILH
SFNIPMQLRVFEIEDRTRVNAKFRYPFYYEMCWYVLERYVCTLTKRSHLIKEYQRESMIT
DRKPSLDSHSSDSWLEMEEESCDIHIKEEKGNLVEKPSKQSGDESSTTNSTHSNGKDAAE
KKQKATLMQQLKRTLSNDSDESSKSIVHSDFPKTPTGSPATDMPCKLTHLTEFELKGLKA
LVEKLESLPENKKCVPEGIEDPQALLEDMKTVLKEHADDDNNLAISGVPVVMWPKKPSKN
RAVGRPKGKIASSPAVKLSANRTSAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGP
GRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDCVEGQEAKFNVMLMECSICNEIIHPGC
LKTKESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLKEQKVNRD
NKELTEIVKKKVEREETPKQIPEEQPKKKPTEGIIKKKPEDGHVRKKRKFEKPPDPSVRK
RLKLVKEEKLLRKKRRSWKTPDERAMMAKTLRRIKQEPDDDLTEAAPKAKESDQSRSSSP
TAGPSTEGSEPKEKKKIRRKRRVSNKELSKELSKELNQEIQKTESSLASENHHPIKSEPE
SDNEESKKCISTNGERMHHFSKGLNGTPKELRHELFPSLKTTPRANNRPPPSLSPPKCMQ
MERHVIRPPPISPPPDSLPLANGAAHVMQREVWMAIFSYLSHRDLCICMRICRTWNRWCC
DKRLWTQIDLNRCKSITPLMLSGIIRRQPASLDLSWTNISKKQLSWLINRLPALRDLNLS
GCSWIAVSALCSSCCPLLRTLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNITE
LRLAGLDITDASLRLMIRHMPLLAKLDLSYCNHVTDQSINLLTAVGTSTRDTLLEMNLSD
CNNVTDQCLTFFKRCGNICLIDLRFCKQVSKESCEQFIAEMSVIVQFGQTEEKLLQKVS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagaaagactctgcgagaagattgcgctctattgaccgcaccaggtacgca
gagcacgaagacctgtcagacgtggaggacatggtgagcatcaggggcttcagcctggag
cagaaggtcagctgcaacgcctaccgagggaacttcgtgcgctacatggaaggcaaagac
tttacctatgaatatgttcaaagagaagcacttcaaacacctctccttttctccaccaag
gaaggactgggtattaaaatgccagaacaagatttcactgttcgagatgtgaagctttta
gttggaagccgccgagtagttgatgtgatggatgtcaacactcagaagagcatagacatg
agcatgtcccagtttgttcgatactatgaaacaccagaaatggaaagggaaaaactgtac
aatgtgatcagtctggaatttagtcacacaaagctagagagagtggtgaagcggcctact
gtggttgatgcagttgactgggtggataacatgtggccacggcatttaaaggaacagcaa
aaggaatcaacaaatgtaatagctgaaatgaagtatcctaaagtgaaaaagtattgtttg
atgagtgttaagggctgctacacagattttcacattgattttggtgggacatctgtttgg
taccatgtgttccgtggtgggaaagtattttggttgattcctccaactgggcacaattta
cagttatatgaggaatggcttttatcagggaaacaaactgacatatttttgggagaccga
tcagaagggtgtcagaggattgagctcaagcaagggcaaacatttttcattccatcagga
tggatacatgcagtgtatacaccagcagattccctagtgtttggtgggaacattcttcac
agcttcaatattcccatgcagcttcgtgtttttgaaattgaagacagaacaagggtaaat
gccaagttccgctatcccttttattatgagatgtgttggtatgtcctagagagatatgtc
tgtactttgaccaagcggtctcacctaattaaggaataccagagagagtcaatgataacg
gacaggaagcctagtttggacagtcattcctcagattcttggttagaaatggaggaagaa
tcctgcgatatacatattaaggaggaaaaaggtaatcttgtggaaaaaccttctaaacaa
tcaggagatgagtcgtctacaaccaatagcacacattctaatggtaaggatgcagctgag
aaaaaacagaaggctactttgatgcagcaattgaaaaggactttgtccaacgactcagat
gaaagtagcaagtccattgtccacagtgatttccccaaaactccaacaggatctcctgct
actgacatgccctgcaaattgactcatctcactgaatttgaactgaaaggtttgaaagcc
ttagtggagaaacttgagtccctccctgaaaataagaaatgtgtccctgagggaattgag
gatccacaagcactacttgaggacatgaagacagtactaaaagaacatgcagatgatgac
aacaatctggccatttctggtgtaccagtggtgatgtggcccaagaaacccagcaagaac
cgggcagttggaaggcccaaagggaaaattgccagttcacctgcagtgaaactctctgct
aacagaactagtgcaggtgcacgtcgccggaggactcgatgccgtaaatgtgaggcatgt
ttacgcaccgagtgcggggagtgtcacttttgcaaggatatgaagaagtttgggggtcca
ggaagaatgaagcagtcgtgtattatgcgccaatgcattgcacctgttcttcctcatact
gctgtttgcctggtgtgtggagaagcagggaaggaggattgtgtagagggacaagaagct
aagtttaatgtcatgctgatggaatgctccatctgtaatgaaataatccacccaggatgc
cttaagacaaaggagtcagacggtgtagtaaatgatgaacttccaaactgctgggagtgc
ccaaaatgcaatcatgctgggaaaactgggaaagtctacaagcaaaaaagaggcccggga
ttcaaatacgcttccaatctgcctgggtcgcttcttaaggaacagaaggtgaatcgagac
aataaggagttaactgagattgtgaaaaagaaagtggagcgagaggagacccccaagcag
atcccagaagagcagcccaaaaagaagcctactgagggaatcattaaaaagaagccagaa
gatggacatgttaggaagaaacgaaaatttgagaagcctccagatccctcagtgaggaaa
cggttaaagcttgtgaaagaagagaagctcttgaggaaaaagaggagatcatggaaaaca
ccagatgaacgcgcaatgatggcaaaaacacttaggcgtataaaacaagagccagatgat
gatttgactgaagccgcgccaaaagccaaggaaagtgaccagtcaaggtctagctctcct
actgcaggtccaagcacagaggggtcagagcctaaggaaaagaagaagattaggagaaag
cggcgtgtttccaataaggaacttagcaaggaattaagcaaagagttgaaccaggagata
caaaaaactgaaagtagtttggccagtgagaaccaccatcctattaaatctgagccagaa
agtgacaacgaagagtcaaaaaaatgcatatctaccaatggagaaaggatgcatcatttt
agcaaaggattaaatggcactccaaaggaactgaggcatgagctgtttcccagtctgaaa
actaccccaagggctaacaatcgcccaccaccatccttgtcacctcctaaatgcatgcaa
atggagcggcatgtaataaggccaccccctattagtccccccccagactccctgcctcta
gcaaatggagcagcccatgtgatgcagagagaagtctggatggccatttttagctacctc
agccacagggacttgtgcatttgtatgagaatctgcagaacatggaacagatggtgttgt
gataagaggctatggacacaaattgacttaaaccgatgtaaatcaatcactccactcatg
ctaagtggcattattaggagacagccagcatcacttgaccttagctggacaaacatatcc
aaaaaacaactcagttggcttataaaccggcttccagctctccgggaccttaacttgtct
ggttgttcttggattgccgtttcagctctttgtagttcctgctgccctttacttaggaca
ctcaatgtccagtgggtagaaggactaaaggatgcacaaatgagggatctcttatctcct
ccaacagataatagaccaggtcagattgataaccgcagtaagctgagaaatatcacagag
ctccggctggcaggcttggatatcactgatgcctcgcttcgccttatgattcggcatatg
cctctccttgccaaattagacctgagctactgtaaccacgtcacggatcagtcaatcaac
ctgctcacagcagtggggacctccaccagggataccttattagaaatgaacttgtcagac
tgcaataatgttacagatcagtgcctgacttttttcaaacgctgtgggaacatctgcttg
attgacctccgattctgtaagcaggtcagcaaggaaagctgtgagcagttcatagcagaa
atgtctgtgattgtacagtttggccaaaccgaagaaaagcttcttcaaaaggtcagctaa
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integrated database retrieval system
