KEGG   Xenopus laevis (African clawed frog): 495253
Entry
495253            CDS       T01010                                 
Symbol
snu13.S, fa-1, fa1, hoip, nhp2l1, nhp2l1-a, nhpx, otk27, snrnp15-5, snu13, spag12, ssfa1
Name
(RefSeq) NHP2-like protein 1
  KO
K12845  U4/U6 small nuclear ribonucleoprotein SNU13
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03008  Ribosome biogenesis in eukaryotes
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    495253 (snu13.S)
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    495253 (snu13.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    495253 (snu13.S)
   03009 Ribosome biogenesis [BR:xla03009]
    495253 (snu13.S)
Spliceosome [BR:xla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    495253 (snu13.S)
Ribosome biogenesis [BR:xla03009]
 Eukaryotic type
  Sno RNPs
   Box C/D snoRNPs
    495253 (snu13.S)
SSDB
Motif
Pfam: Ribosomal_L7Ae RNase_P_pop3 PELOTA_1 UPF0147
Other DBs
NCBI-GeneID: 495253
NCBI-ProteinID: NP_001088399
Xenbase: XB-GENE-963828
UniProt: Q5XH16 A0A974HM54
LinkDB
Position
4S:92838899..92841470
AA seq 128 aa
MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA
EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ
QAIERLLV
NT seq 387 nt   +upstreamnt  +downstreamnt
atgactgaaccagaagtgaaccccaaagcctatccacttgcggatgcccagcttacaaag
actctcttggatctcgttcagcaatcagctaattacaagcagctccgcaagggtgctaat
gaagctacaaagaccctaaacagaggcatagctgagttcatagtcatggcagctgatgca
gaacccctggagatcattctacaccttccactcctgtgtgaagacaagaacgtcccctac
gtgtttgtgcgctccaagcaggcacttggaagagcttgtggagtctctaggccagtgatc
gcttgttcagtcaccatcaaggaaggttcccaattgaagccccaaatccagtctgttcag
caggctattgagaggctgctggtgtaa

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