KEGG   Xenopus laevis (African clawed frog): 734929
Entry
734929            CDS       T01010                                 
Symbol
traf6.S, rnf85, traf6-a, traf6-b, xtraf6
Name
(RefSeq) TNF receptor-associated factor 6-A
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04010  MAPK signaling pathway
xla04120  Ubiquitin mediated proteolysis
xla04140  Autophagy - animal
xla04144  Endocytosis
xla04517  IgSF CAM signaling
xla04620  Toll-like receptor signaling pathway
xla04621  NOD-like receptor signaling pathway
xla04622  RIG-I-like receptor signaling pathway
xla05132  Salmonella infection
xla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    734929 (traf6.S)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    734929 (traf6.S)
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    734929 (traf6.S)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    734929 (traf6.S)
   04140 Autophagy - animal
    734929 (traf6.S)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    734929 (traf6.S)
   04621 NOD-like receptor signaling pathway
    734929 (traf6.S)
   04622 RIG-I-like receptor signaling pathway
    734929 (traf6.S)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    734929 (traf6.S)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    734929 (traf6.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    734929 (traf6.S)
   04121 Ubiquitin system [BR:xla04121]
    734929 (traf6.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     734929 (traf6.S)
Membrane trafficking [BR:xla04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    734929 (traf6.S)
Ubiquitin system [BR:xla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    734929 (traf6.S)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 TRAF6_Z2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 U-box RING_XB3-XBAT31 TRAF3_RING zf-RING_11 zf-TRAF_2 Med21 Spc29 FlgK_D1 zf-rbx1 SlyX ATG16 DUF16 CCDC18_1st BAR LMNTD2_N DUF7310 DUF948 CCDC39 Prok-RING_4
Other DBs
NCBI-GeneID: 734929
NCBI-ProteinID: NP_001089863
Xenbase: XB-GENE-6254727
UniProt: Q3MV19
LinkDB
Position
4S:complement(16017007..16033539)
AA seq 556 aa
MSILNPRTSLEAGDSEDACCAAMASVCCINTKEDADSPSAGLPSGTTQNLDVEEIQGYDV
EFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSLRNAGHKCPVDNEILMEKQLF
PDNFAKREILSLRVKCPNLGCTDTMELRHLEHHLVQCQFASIECSQCQGSFLKLLLDKHM
EHECGRRRTFCDNCGLAMAYEDKSGHELICPMAYVTCDYCQTNLIREQMPAHYSMDCTMA
PIPCMYCEFGCREKMQRHNLAGHLQDFTQAHMRMMAQTLRSFSTTPTSHISDISFCDPNQ
FEPVPLSVAPAHPSHMPSQQDCSQETRNLRETVEQLEGRLVRQDHQIRELIAKMETQCTY
VNELKHTIHSLEDKVADMDAHRCNGVFIWRIKGFSGLQKSQEEEKPVVIHSPGFYTGDPG
YKLCLRLHLQLPSAQRCANYISLFVHTMQGDYDSLLPWPLQGTIRLSILDQSESTARQDQ
VEVMDTKPDLLAFQRPTAPRNPKGFGYVTFMHLNTLKQRQYVKNDTLLVRCSVNIHLDLT
SPRREGFQPRSGEGTL
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgagtatcctgaacccaaggaccagtttggaggcaggagattcagaagacgcctgctgt
gcggctatggccagcgtttgctgcataaacaccaaggaagatgctgacagtccctcagcc
ggacttcccagcgggacaacacaaaacttggatgtggaggagattcaaggctatgacgtg
gagtttgatcctcccttagaaagcaagtatgagtgtcccatctgcctcatggctctgcgg
gaagctgtacagactccttgtggacacaggttttgtaaggcctgtatccttaaatctctc
aggaacgcaggacacaagtgcccggtggataatgagattctcatggagaagcagctgttc
ccggacaactttgccaaacgggaaatcctctctttaagggtgaagtgccccaacctgggc
tgcacagacaccatggagctgaggcacctggagcatcacttggtgcagtgccagtttgcc
agcattgaatgctctcagtgccagggctccttcctgaagctcctcctggataaacacatg
gagcacgaatgcggccggcggaggacattctgcgataattgtggtctggccatggcgtat
gaagacaaatccggccatgaactaatatgtcctatggcctatgtgacctgtgactactgt
cagaccaatctcatccgagagcagatgccggctcactacagtatggactgtaccatggca
ccaatcccctgcatgtactgtgagtttggatgtagagaaaagatgcaaaggcataatctg
gccggacacctgcaagacttcacccaggcacacatgcgcatgatggcccagaccctgcga
agcttcagcaccactccaactagccacatctctgatatctcattctgtgaccccaaccag
tttgagcctgtacccctgtccgtagcacccgcccacccttctcatatgccttcccagcaa
gactgcagtcaggagaccaggaacctcagggagaccgttgagcagctggaaggacgcctt
gtaaggcaggaccaccagatccgtgagctcatagccaagatggagactcagtgcacctac
gtgaatgaactgaaacacaccatccattctctggaggacaaagtagccgacatggatgca
catcgctgcaacggtgtctttatatggaggatcaagggtttcagtggcctccaaaagagc
caagaagaggagaagccggtggtgattcacagcccagggttctacaccggggatcctgga
tataagctttgtctacggctgcacctccagcttcccagcgcccaacgatgtgccaactac
atctccttgtttgtccacaccatgcagggggattatgatagcctcctaccttggccactc
cagggaaccatccgtctgtctatcctagaccaatcagaaagcaccgctaggcaggaccag
gtggaagtgatggacaccaaaccagatttgctggctttccagaggccgaccgctccgaga
aaccccaaaggctttggctatgtcacttttatgcacctcaatacactgaagcagcggcag
tatgttaagaacgacaccctccttgtgcgctgctcagtgaatattcacctggatctgacc
agcccgcgacgggagggcttccaaccacgcagcggagaggggaccctatag

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