Xiphophorus maculatus (southern platyfish): 102216423
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Entry
102216423 CDS
T02923
Symbol
arhgef1
Name
(RefSeq) rho guanine nucleotide exchange factor 1 isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04270
Vascular smooth muscle contraction
xma04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
102216423 (arhgef1)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
102216423 (arhgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102216423 (arhgef1)
Membrane trafficking [BR:
xma04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
102216423 (arhgef1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
102216423
NCBI-ProteinID:
XP_023186077
Ensembl:
ENSXMAG00000006776
UniProt:
A0A3B5QDL7
LinkDB
All DBs
Position
3:3289823..3341082
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AA seq
1039 aa
AA seq
DB search
MSIIGAEDEDFENDLADSADDKCPHFDSIDLLKKRPTHLLVFMQHVILQFDPAPLLCYLH
ADIVKNLSARDTKKQFPEFYNNFLEKGAILRVSMPSSLSFELDRTRPELLSDDTQRRYAA
DVQKFQTAEVAKQLEDFRQKRMMGMTLLEEQVMDVENHYPTDRVPLDMKEKSVAENLLEK
MYDSQLTFVPDEDKCQAIFAAVAAYMKHLEVKNRAGDSKKSKRGFPWIKKNPDPQKSKTR
GFHVPIWIGGSAVEGKLKEAEVDKDIKGREVKGGPGRGSLTETPVPSIKKPENSASVPNA
EPAGNNLTPTTTEPTSTDGQPITCSDLPSPTDLLLPEIGAVVPIIEHSSPHDAHPEESDR
ERRKPSRKVGRSESARVDRHSSRRRGSSRKQSRSRSDVDLQPPSSATTPTPLSPQNLHPL
DGPAFPSEVPGQAPTSPSPQLEEIDPRLQELEQDPPSWRVLASSETLKNLSKKETKRQEV
INELFATEHAHVRMLSVLQWVFAKPLERAEILSALDLETIFPSLEEIIDMHYNFYESLKK
LRVSDNYIVKNISPTLLNRFGGPEGEWFQKLTARFCSYQTYALDQIKQRQKKDARFNSFI
QDAESKPQCRRLQLKDIIPTEMQRLTKYPLLLENIAKNTEEKEEKESIQQSAECCRKILN
HVNEEVKTMGNMLTLKEYQKKLDTSGLKASVELYTEYKSIDLTQRKMLFEGPLVWRVTKE
KAIDVHCLLLDDMLVLAQKQEDKMLLKCQSKSNITAQEGKQMLSPIIKLDSVFLREVATD
RKAFYVIFTWDSGAQIYELVAQSVAEMKTWHDIIKSTVDVLKKSGTSIRLHIPPGVGITP
LSPTTLSAPLNPSENGSLRGSSDQERDSVTDHNAVPPRVKLIETLTDRGLVQVLDYSSRN
QEKVADGALDEVMSLKRLLIGSISLSEDSQHDEEHEEEQPDKPSHETEAPQPTVESESTD
SGYMQVNTGPSAKEDGAKQEDEDGSIFAPLVLSQERRAEVSRRLDSLLQMIQRLQAVEEE
HHKLSEVLSEFSLESANFQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcattggggctgaagatgaggactttgagaatgatctagcagattcagcagat
gacaaatgcccacacttcgacagcatcgacttgttgaagaaacggccaactcacttgctg
gtgttcatgcagcatgtcattctccagtttgaccctgcgcccttgttgtgttatcttcac
gctgacattgtgaagaacctcagtgccagagacaccaagaaacagttcccagagttctac
aacaacttcttggagaagggtgctattctcagagtctcgatgccatccagtttatccttt
gaattggaccgaactcgcccagaattactgtcagatgacacccaaaggcgttatgctgca
gatgttcagaaatttcaaactgcagaagtagccaaacagctggaagatttcaggcaaaaa
aggatgatgggtatgaccctccttgaggagcaggtgatggacgtggagaatcactatccc
actgaccgcgtcccgttggatatgaaggagaagtctgtggccgagaatctgttggagaag
atgtatgattcacaacttacttttgtcccagatgaggataaatgccaagccatctttgct
gcagtggctgcctacatgaagcacctcgaagtcaaaaacagggcaggagatagtaaaaag
tccaaaagaggtttcccttggattaagaagaatcctgatcctcaaaaatccaagactcgg
gggttccatgttccaatctggattggaggcagtgcagtcgaaggcaaactaaaagaagct
gaagtggacaaagatattaagggaagggaagttaaagggggtccaggcagaggctcattg
accgaaactccagttccttccatcaaaaaacctgaaaactcagcctcagtgccaaatgcg
gagcctgctggcaacaacttgacccccaccaccacagagcccacttcaaccgatggtcag
ccaatcacttgctcagacctcccctcgccgacagacttgctccttccagagatcggagcc
gttgttcctatcattgagcacagctcaccccacgacgctcacccagaggagtcggacaga
gaaagacggaagccaagcaggaaagtaggacgcagcgagagcgcccgcgtggaccggcac
tcgtctcggcggcgtggctcttctcgtaaacagtctcgctcccgtagcgacgtggacctg
cagcctccgtcttctgcaacaactcctaccccgctgtccccgcagaacctccatcctttg
gatgggccagctttcccttctgaagttcctggccaggccccaacaagcccgtccccacag
ttggaggagattgacccccgcttgcaggagttggagcaggacccgcccagctggagggtg
ctggcgtcttctgaaaccttaaagaacctcagcaagaaggagaccaagaggcaggaagtc
ataaacgagttgtttgccacagagcatgcccacgtgagaatgctgagtgtccttcagtgg
gtgttcgccaagccgctggagagggcggaaatcctctctgccctggaccttgagaccatt
ttcccaagccttgaggaaatcattgacatgcactataacttctatgaaagcctgaagaaa
ctgcgtgtcagtgacaactacatcgttaaaaacatcagccccacattgctcaacaggttt
ggtggccctgaaggagaatggtttcagaaactgacagccagattctgcagttaccagacc
tatgctctggaccagatcaagcaaagacagaagaaagacgctcgctttaactcttttata
caggatgcagagagtaaaccccagtgccgcagactgcagctcaaagacattattcctaca
gaaatgcagaggctaacaaagtatccactgttgctggaaaacattgcaaagaacacagag
gaaaaagaggagaaggagtcgatccagcaaagtgcagagtgctgcagaaagatcctcaac
catgtcaatgaagaggtcaaaacaatggggaacatgttgactctaaaggagtaccagaaa
aaactggacacatcggggctgaaagccagtgttgagctttatactgaatataagagcatt
gacttgactcagaggaagatgctttttgaaggtccgctggtctggagagtcaccaaagag
aaggctattgatgtgcattgcctgctgctggacgatatgctggttcttgcacagaagcag
gaggacaagatgttgctaaaatgccagagtaaaagtaacattactgcacaggagggcaag
caaatgctgagcccaattataaagctggactccgttttcctccgtgaagtggcaacagat
cggaaggctttttatgtgatattcacatgggacagtggagctcagatctatgagctggtg
gctcagtctgttgcagaaatgaaaacttggcatgatataataaagtcaacggttgacgtt
ctgaagaagagtggaacatccatacggttacatattcctcctggagttgggattactcct
ctcagtcccaccacgctgagtgctccattgaatccatctgagaatggaagtttaagaggc
agcagtgaccaagaaagggacagtgtgacagatcacaacgctgttcctccaagggtcaag
ctgatagagacgttgaccgacaggggtctcgttcaggtactggattactccagcaggaac
caggagaaggtggctgacggtgctttggatgaagtcatgtcacttaaaagattgctgatt
ggcagcatcagcctgtcagaggactcgcagcatgatgaagaacatgaagaggagcaacca
gataagccgtctcatgaaacggaggcccctcagccaacagtagaaagcgagtctacagac
agcggatacatgcaggtgaacaccggcccttctgcgaaggaagatggagcaaaacaagaa
gatgaagacgggagtatctttgcccctctggtcttgtcccaggagagaagagccgaagta
agcaggaggctggacagcctgctgcaaatgatacagagactacaggctgtggaagaggag
catcacaagctgagtgaggtcctttctgagttctcgctggaaagcgccaacttccagtaa
DBGET
integrated database retrieval system
