Xiphophorus maculatus (southern platyfish): 102219975
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Entry
102219975 CDS
T02923
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102219975 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102219975 (eftud2)
Spliceosome [BR:
xma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102219975 (eftud2)
Complex C
U5 SnRNP specific factors
102219975 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Roc
Ras
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
102219975
NCBI-ProteinID:
XP_005796730
Ensembl:
ENSXMAG00000008494
UniProt:
M4A236
LinkDB
All DBs
Position
16:complement(6259218..6274079)
Genome browser
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDDDDLDAEDRDIDEGDEDEEDEPANEDENVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKHKKFTLMEQELPATVYDMEFLAD
LMDGTELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSMRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
TSNSQRSFVEFVLEPLYKILSQVVGDVDTTLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGAKIKIDHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLDDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatttgtatgacgagtttggtaattacatcggtccagagctggactctgat
gacgatgatgatgatctggatgcagaggacagggatattgacgagggggatgaagatgaa
gaagatgagcctgcaaatgaggatgagaacgtacctggcatggaggtggtcctgcatgag
gacaagaaatactatcccacagcggaggaggtttacgggccggaagtagaaactattgtc
caggaagaagacacacaacctcttactgagcccattatcaagccagtcaagcacaagaag
ttcacattgatggagcaggagttacctgccactgtttatgacatggagtttctggcagat
ttgatggacggtaccgagctgatccgtaacgtcaccctctgcggtcacctccaccatggc
aagacgtgttttgtggactgcctgattgagcaaactcatcctgaaatcagaaagagagat
gatgtcgatctccggtacacagacatccttttcactgagcaggagcgaggagtcggcatc
aaaagcactccagtcacaatggtgctgcctgactccagaggaaaatcttaccttttcaac
atcatggatacaccaggccatgtgaacttctctgatgaggtcacatccagcatgaggatc
tcagatggagttgtcctcttcatcgatgcagctgaaggagtgatgctgaacacggagcgc
ctgatcaaacatgcagtacaggagcgcatggccatcaccatctgcatcaacaaggtggac
cggctcattgttgagctcaaactgccaccaacagatgcttattataaacttcgacacatt
gtggatgaggtcaacggtatgctcagtacgtactccacagacgagaacttggtggtgtct
ccgctcctcgggaatgtttgcttcgccagctctcagtacagcatctgtttcaccctgggg
tcctttgccaagatctactcagacacctacggtgatatcaactataacgagtttgcaaag
cggctttggggagacatttatttcaaccccaaaactcgtaagttcacaaagaaagctccc
accagtaactcccagcgcagctttgtggagtttgtcctggagcctctttacaagatcctc
tcacaggtggttggggatgtggacaccaccctgccccgggttctggatgaacttgggatc
cacttgaccaaggaggagctgaagctgaacatcaggcctctgctccggctggtctgtaac
cgtttcttcggagagttcaccggttttgtggacatgtgcgtgcaacacatcccctcacca
caagagggtgctaaaataaagatagaccatacatacacaggaggactagactctgacttg
ggagaagccatggcagaatgtgatcctgatggtcccttgatgtgccacaccactaagatg
tacagcactgaggatggggtccagttccatgcctttggtagggttctgagcggtaccatt
caggcaggtcagccggtcaaggttctgggagagaactacacgctggatgacgaggaagac
tcgcagatttgcactgtgggtcgcctctggatctctgttgccagataccaaatcgaagtg
aaccgagttcctgcaggaaactgggttctgatcgaaggctgtgaccagccaatcgtgaag
acggccaccatcacagaaccacgggggaacgaagaggctcagattttcaggccgttaaag
tttaacacagcttcagtcatcaagatcgccgtggagcccgtaaacccgtccgagcttccc
aagatgttggacggactgaggaaggtcaacaagagctacccttctctaaccacaaaggtg
gaagagtctggagagcatgtcatcttagggacaggagagctttacctggattgtgtcatg
catgatctgaggaagatgtactccgaaattgacattaaagtcgctgatcccgttgtgacc
ttttgtgaaacggtggttgagacttcgtctcttaagtgttttgctgagacgcccaacaaa
aagaataagatcaccatgatcgctgagcctctggagaaggggctcgccgaggacatcgag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagagttcttccagacgaag
tacgactgggatctgctggctgccaggtctatctgggcctttggaccagacacaacgggg
ccaaatattctcgtggatgacacgcttccttcggaggtggacaaagctttgctcggttca
gtcaaagacagcatcgttcagggcttccagtggggcaccagggagggacctctgtgtgat
gagcctattagaaatgtgaagtttaagatcctggatgccgtcatcgctcaggagcctctc
cacagaggaggaggtcaggtcatccccacagccaggagggtggtctactccgcctttctc
atggccactccaaggttaatggagccgtattactttgtggaggtccaggctccagctgac
tgtgtgtctgccgtctacaccgttctggctaggagaagaggtcacgtcacccaggatgca
cccatacccggctctcctctctacaccatcaaggctttcatcccggccatagactcgttc
ggctttgagaccgaccttcgcacacacacacagggtcaggccttcgcgctgtctgtgttc
caccactggcagattgttcccggtgacccgctggacaagagcattgtgatccggcccctc
gagcctcagcccgccccccacctggcccgagagttcatgatcaagaccagaagacgcaag
ggtctgagcgaagatgtgagcatcagcaagttctttgacgatcccatgttgttggagttg
gcgaagcaggatgtggtgcttaattatccgatgtga
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