Xiphophorus maculatus (southern platyfish): 102220311
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Entry
102220311 CDS
T02923
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102220311
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102220311
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
BppU_N
Motif
Other DBs
NCBI-GeneID:
102220311
NCBI-ProteinID:
XP_023184239
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Position
23:complement(16511353..16521607)
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AA seq
833 aa
AA seq
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MERAGRGIMWNKLSTWQVLLWWHNFFILWSTIDAQTRYSIPEELKRGSVVGNIAKDLGLL
VPELLRRKMRITSEAGKQYFNVDLGKGELLVTDRIDREELCGQRPSCLLPLELVIDNPLQ
VHRVEIEIQDTNDHSPSFLTKEKVVKIAELVNPGARFPLESATDPDVGANSVRTYLISKN
EHFKLTVKNLKDGRKIPELVLEKALDRETQAVHNLVITAVDGGDPVRSGTSEIAVIVLDI
NDNAPQFEKQVYEANVSERSAIGTEILQVKASDADEGLNGEIEYVFAEQTSDITLSLFDI
NPSTGVITVKGVLDHESNSLHRFDITAKDKGNPEMDGHCGVEIKINDINDNNPEIVVTSL
TTPVPEDSAIGTVIAIISTRDADSGDNGKVTLTLSPKSLFKLNPSISKHFSLVTNGPLDR
EKNSQYSIKVTASDSGKPPLTSEKTIIVQLLDVNDNPPVFSQKLYTVYVKENNAAGMILC
AVAASDLDSGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQV
QAKDQGSPSLSSNATVHVFILDQNDNTPAVIYPSSAALGSLSHQRMPRSAKAGHLVTKVT
AVDADSGYNAWISYRLAEATDASLFTVNQYTGEVRTKRAVYEQDDSSQRLLIEIKDDGQP
VQSATATVSILLEDGLHEPILDLRHKMSEPSKKTGRITLYLILSLGSVSVLSLVTFLILA
VKCIRGSRSSGSCCMRRSDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFRSC
MSPMSEYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVSQGSSNLHA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtgcgggacgtggaataatgtggaacaaattgtcaacatggcaggtgcttctg
tggtggcataatttctttatcttgtggagtacaatagacgcgcagactcgctacagcatc
cctgaggagctgaaacggggatccgtggtgggaaatatagccaaagatttgggtttgctt
gtgcctgaactgcttcggcgtaaaatgcggataacctcggaggctggtaagcagtatttt
aatgtagacttgggaaagggagagctgctggtgaccgacagaatagacagggaggaactg
tgtggacaaaggccgtcctgtttgctgcctttggagctggttatagataacccgctgcag
gtgcacagagttgaaattgaaatacaggatacgaacgatcattcccctagttttctcacc
aaagagaaagtggtgaaaatcgcggagttagtaaatccaggtgcgcggtttcccttagag
agtgccactgatcctgatgtcggtgctaattctgtgcgcacgtatctcataagcaaaaat
gagcattttaaattgacagttaaaaatcttaaagatgggagaaaaattcctgaactggtg
cttgaaaaagctcttgatcgagagacgcaggctgtacacaacctcgtcattacagctgtg
gacgggggagatccggtgcgttcagggacgtcagaaattgcagttatagtgctcgatatc
aatgataatgcaccgcaatttgaaaaacaagtatatgaagcaaatgtcagcgaaaggtct
gcaattggaaccgaaatcctgcaggttaaagcttcagatgcagatgaaggactgaatgga
gaaatagaatatgtgtttgcggagcaaacttcagatattactttatccttatttgacatc
aacccatccactggggttattactgtcaaaggggttttagaccatgaatcaaattcttta
cacagattcgatataactgcaaaagacaaaggaaatccggaaatggacgggcattgtgga
gtggaaatcaaaataaatgacatcaatgacaataatccagaaatagttgttacctcttta
acaacacccgttcccgaagactctgcaattggaacagtcattgcaatcataagcacaaga
gacgcagactcaggtgacaatgggaaagtgacattaacgttgtcaccgaaatccctgttc
aaattaaacccatcgatctcaaaacatttttcactagtcacaaatggtccacttgaccgt
gaaaaaaacagccagtatagtattaaggtaaccgcctcagattctggaaaaccgccatta
acaagtgaaaaaacaataatagttcaacttttagatgtaaatgacaatccaccagttttc
tctcaaaaattgtatacagtttatgttaaagaaaacaatgctgcagggatgattttgtgc
gcggtagcagcgtctgatctggattctggtgaaaacgcaaagatctcttactccatactg
gactctaaagtgcaggacgtctctgtctcgtcttatgtttacattaactcagataacggg
agcatctacagcatgcactcgtttgactatgagaagctgaaagtgtttcagattcaggtt
caggcaaaggaccagggctctccctctctcagcagcaacgccactgtccatgttttcatc
ctggaccagaacgataatacccccgctgttatttacccctcctccgctgccctgggctct
ctctctcatcagaggatgccccgctccgctaaagcgggtcacctggttaccaaagtaacg
gccgtggacgctgactcgggctataatgcctggatctcatacagactggcggaggccaca
gacgcctctctgttcaccgtcaatcagtacacaggagaggtgaggactaaacgcgctgtg
tacgagcaggacgactcctctcagaggctgctgatagagatcaaggacgacgggcaaccg
gttcagtccgccaccgccacggtgtccatcctactggaggacggtctccatgaacccatt
ttagacctccgacacaaaatgtccgagcccagcaagaaaactggcagaatcaccctttat
ttgattctgtctctgggctcggtgtccgtgctgtctctggtgacttttctcatcctggcg
gtgaaatgcatcaggggcagcagaagcagcgggagctgctgcatgagaaggagcgactgt
gatgattacaagaaccccaacagaaacctgcagattcagctcaacactgatggacctata
aaatacgtggaggtcctgggaggagacatgatgtctcagagtcagtcgttcaggtcctgc
atgtctccgatgtcagagtacagtgatttcactttgatcaaacccagcagcaccacagac
tttaaagaagtcatcagtgttctggacgcgtctttacccgacagcacctggacctttgag
agccaacaggtgagtcaagggagcagcaaccttcatgcataa
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