Xiphophorus maculatus (southern platyfish): 102220826
Help
Entry
102220826 CDS
T02923
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04010
MAPK signaling pathway
xma04120
Ubiquitin mediated proteolysis
xma04140
Autophagy - animal
xma04144
Endocytosis
xma04620
Toll-like receptor signaling pathway
xma04621
NOD-like receptor signaling pathway
xma04622
RIG-I-like receptor signaling pathway
xma05132
Salmonella infection
xma05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102220826 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102220826 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102220826 (traf6)
04140 Autophagy - animal
102220826 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102220826 (traf6)
04621 NOD-like receptor signaling pathway
102220826 (traf6)
04622 RIG-I-like receptor signaling pathway
102220826 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102220826 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
102220826 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102220826 (traf6)
04121 Ubiquitin system [BR:
xma04121
]
102220826 (traf6)
Enzymes [BR:
xma01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102220826 (traf6)
Membrane trafficking [BR:
xma04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
102220826 (traf6)
Ubiquitin system [BR:
xma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
102220826 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
TRAF6_Z2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF3_RING
RING_XB3-XBAT31
zf-TRAF_2
zf-rbx1
U-box
zf-RING_11
BLI1
Motif
Other DBs
NCBI-GeneID:
102220826
NCBI-ProteinID:
XP_005811126
Ensembl:
ENSXMAG00000011827
UniProt:
M4ABK5
LinkDB
All DBs
Position
4:5417448..5427291
Genome browser
AA seq
570 aa
AA seq
DB search
MACCESNKGSLEEDSYDGPVGSLSECALLMQEKERESLLSPSESPGTLMNSSSSSLQNTA
PLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDAGQRCPVDNEM
LSEDQLFPDNFAKREILSLTVRCPNSGCTDKMELRHLENHLAVCQFATVPCPQCQQPIRK
GYLEEHKTVECQRRPMSCPDCVASFVFEDKELHEQQCPFASVRCQYCEMDLIRDQMESHC
DIDCPKAPIACNFSMFGCKERMQRHDLAQHMQEFTQMHMRYMAESLRGLSLNGTSPKPLR
TLGPSILAEDIGAAAPAAACGGLRGAASCSISSAAPQPTDEMQRIREMDGRLVKQDHQLR
ELIILKETQAGQLAELRRRVSMLEETVKELEAHQCLGIFIWRLRGFSTLLRNQEAGMTVV
EHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGTFDGQLTWPLQGTIRLAI
LDQGPECQHHMEIMETKPDLQAFQKPVIARNPKGFGYVTFLHLQQLSQKAFLKDDTLLIR
CEVTPRFDSTFHREGPAVQPRGPEASISKE
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctgtgaaagcaataaggggagtttggaggaggacagctatgacggaccagtt
ggatcgctatctgaatgtgccttgttaatgcaggaaaaagaaagggaatcccttttaagc
ccatcggagagtcctggcactttaatgaacagctcatctagtagtcttcagaacactgcc
ccacttcagggttatgatgtggaatttgacccaccccttgagagtaagtatgagtgccca
atctgcctgatggccttaagaaatgccattcaaacacggtgtggtcaccgattctgcaag
agctgcattgagaagtctattcgtgatgcaggacagcggtgccctgtggacaatgaaatg
ctgtcagaagaccaactgtttcctgataattttgccaaaagagagattctatcgctaact
gttcgttgtccaaactctggctgcactgacaaaatggagctccgacatttagagaatcat
ttggctgtgtgtcagtttgccactgtgccttgtccgcagtgccagcagcctataagaaag
ggctacctagaggagcacaaaactgttgagtgccaaagaaggcccatgtcttgcccagac
tgtgtggcatcctttgtttttgaggataaagagctacatgagcagcagtgcccatttgcc
agcgtgaggtgccagtactgtgagatggatctgatcagagaccagatggaatcccattgt
gatatagattgcccaaaagcccccattgcctgtaactttagcatgtttggctgtaaggag
aggatgcagcgacatgacctggctcagcacatgcaagagttcacacagatgcacatgcgt
tacatggcagagtccttgcgtggcctcagcctcaatggcacgtcacccaaacctctcaga
actctagggccgtccattttggccgaggatattggcgctgcagcaccagcggcagcctgc
ggcgggctcagaggagctgcgagctgcagcatcagctccgccgcaccccagcccaccgat
gagatgcagaggatcagagagatggatgggcgattggtgaagcaggatcaccagctgcgt
gagctcatcatactgaaagagacacaagcagggcagcttgcagagctgcgtcgtagggtc
tcaatgctggaggaaaccgtgaaggagctggaggcccatcaatgcctcggcatcttcatc
tggcgcctcagaggtttctctaccctcctgcgcaaccaagaagcaggcatgacagtggtc
gagcacagccctggcttctacacaggccgtccaggctacaagttgtgtctgcgcttacac
ctgcagacgcccaacgccccacgctgctccaacttcatctcccttttcgtccacactatg
caaggaacttttgacgggcagctgacttggcctcttcaaggaacgatccggcttgccatc
ttagaccagggacccgagtgtcagcatcacatggagatcatggagacaaagccagacctg
caagccttccagaaacccgtgattgcacgcaatcccaaaggatttggctacgtcactttt
ttgcatctgcaacagctgagtcagaaagcttttttgaaagatgacactctgctgatccgc
tgcgaggtgacgccacgctttgatagcacgtttcatcgggagggcccagccgtgcagcca
agaggacctgaagcatcgatttcaaaagaataa
DBGET
integrated database retrieval system
