Xiphophorus maculatus (southern platyfish): 102222883
Help
Entry
102222883 CDS
T02923
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04115
p53 signaling pathway
xma04145
Phagosome
xma04148
Efferocytosis
xma04350
TGF-beta signaling pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102222883
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102222883
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102222883
04148 Efferocytosis
102222883
09143 Cell growth and death
04115 p53 signaling pathway
102222883
09144 Cellular community - eukaryotes
04510 Focal adhesion
102222883
09142 Cell motility
04820 Cytoskeleton in muscle cells
102222883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102222883
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102222883
Membrane trafficking [BR:
xma04131
]
Endocytosis
Phagocytosis
Opsonins
102222883
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102222883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
cEGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
102222883
NCBI-ProteinID:
XP_023203739
Ensembl:
ENSXMAG00000007775
LinkDB
All DBs
Position
15:5913460..5927680
Genome browser
AA seq
1169 aa
AA seq
DB search
MKVTGICLLLMLCSCEGARVAESRDDNSVFDLFELIRVPSKNHGVTLAKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSVHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDIVYSTENKQQVVSIEEVDLATGNWKNITLFVQEDRAQLFTGCEEVNTAELDA
PIQNILTQGTPAGAQLRVGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQSAASSDTM
IVTNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTN
ENKLIKNRIGIHSGVCIHNGIVRKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNICEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQLGGRDCVGEGRQT
EKCEKSPCPINGNWGPWSPWGTCTLTCGGGVQTRERLCNDPAPLHGGKECVGDAIDRQMC
NKKACPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGFTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAVANKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNGDLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGTGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDEVGDRCDNCPYNS
NPDQTDTDNNSEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNIGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgacaggaatatgtttgctgttgatgctttgttcctgtgaaggtgcgagagtc
gcagagagtcgagacgacaatagtgtgtttgatttgtttgagctcatccgagtccccagt
aagaaccacggggtcaccctggcgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggaccttatccccccggtccccgagagcgccttcagggacctgatcgactcg
gtccacgcggaaaggggcttcctacttctgctcaacttcaagcagtttaaacggaccagg
ggcagcctcctgacagtggagaagcgagacggctccggagccgtcttcgagatcgtctcc
aacggcaaggcgaacaccctggacatcgtttactccaccgagaacaagcaacaggtggtt
tccatcgaggaggtggatctggccacgggtaactggaagaatatcacgctcttcgtgcag
gaggaccgggcgcagctgttcacaggatgcgaggaggtgaacaccgccgagctggatgcg
cccatccagaacatcctgacgcaaggcactccagccggcgcgcagctccgagtcgggaag
ggagcagtgaacgacaggttcatgggagtgctgcaaaacgtgcggtttgtgtttggaaca
acgctggacgcgatcctgcgcaacaaaggatgccagagcgctgcttcaagtgacacaatg
attgtgactaacctgaacggctcctctgccatcagaacagagtacactggacacaaaact
aaagacctgcagatggtgtgtggcttctcctgtgaggatctgatcagcatgttcaaggag
ctgaaaggcctcggtgtcgtggtcaaggagctgtccaacgagctccgccaactgacaaat
gagaacaagcttattaagaaccgcattggcatacatagtggcgtctgcatccacaacggc
attgtgcgcaagaacaaagacgaatggaccgtcgatgactgcactgagtgcacttgtcag
aactcagccaccgtgtgccgcaaaatctcctgccctctgatcccgtgtgccaacgccacc
gtccccgatggcgaatgctgtcctcgttgtggaacaccgagtgactatgctgaggacggc
tggtcgccctggtctgaatggactcattgttctgtgtcatgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataatatctgcgagggcacctcggtgcaaacccgc
gactgctacctccaggagtgtgacaagcgcttcaagcaggacggaaactggagtcattgg
tcaccctggtcgtcgtgctccgtcacctgtggttctggtgtcatcactcgtatccgcctc
tgcaactcccccacccctcagctgggaggcagggactgtgtgggagagggccgacaaact
gagaagtgcgagaagtctccatgtcccattaatgggaactggggaccctggtcaccttgg
ggtacgtgcaccctcacctgtgggggtggagttcaaactcgtgagcgcctgtgcaatgat
cctgccccactgcatggtggtaaagagtgtgttggcgatgccatagacagacagatgtgc
aataagaaagcttgcccaatagatggatgcttgtccaacccttgcttttctggagccaag
tgcactagtttccctgatggttcctggaagtgtgggaaatgcccagttggcttcacagga
aatggcataaagtgcaaagatgttgacgagtgcaaggaggtaccagatgcgtgctttgag
tttaacggtgtgcaccgctgtgagaacacagagccaggatacaactgtctgccctgccct
cctcgctactcaggaccccaaccatttggcaaaggtgttgagcaagctgttgctaacaaa
caggtgtgcacaccccgtaatccttgcctcgatggaagccatgactgcaacaaaaacgct
cgctgcaactacctcggacacttttccgaccccatgttccgctgcgagtgcaagcctgga
tatgctggcaatggtcatatctgtggagaggacacagatttggacggatggcccaatggt
gatctggtctgtgtggagaatgccacctaccattgtaaaaaggacaactgtcccaatctt
ccaaactcagggcaggaagattatgataaagatggaactggagacgcatgtgacgatgat
gatgacaatgatggtattcctgatgacagggacaactgtccgtttgtgtacaatcccagg
cagtatgattatgaccgcgatgaagtgggggatcgctgtgataactgcccttacaatagc
aacccagaccagacagacacagacaacaacagcgagggagacgcctgtgctgtggacatc
gatggagatggaatactgaatgagaaggacaactgtccctatatatacaacgttgaccag
agagacacagatctggacggagtgggagacatgtgtgataactgtcctctggaacataat
cccgatcaggtggattcagatgatgatagagtgggagacaagtgtgacagtaaccaggac
atcgacgaggacggacaccagaacaacctggacaattgcccatatattcccaacgccaac
caggctgatcacgacaaggatggcaagggagatgcctgtgaccatgatgatgacaacgat
ggcatccctgatgacaaagacaactgtagactggccttcaaccccgaccagctggattct
gatggcgatggtcgtggagatgcttgcaaagacgactttgaccaggacaacgttcctgat
atctatgatgtttgtcctgagaacttcgatatcagtgagacagacttccgcaagttccag
atggttcctctggatccaaagggcacctcccagattgatcctaactgggttgtccggcat
caaggcaaagagctggttcagactgtcaactgcgatcctggaattgcagttggttaccac
gagttcaacgccgtggacttcagtggaactttcttcataaacacagagagagatgacgat
tatgctggctttgtgttcggctaccaatccagttccaggttctacgttgtgatgtggaag
cagattacgcagacctactggtccagtaaacccaccaaagcccagggatactcaggcctg
tccatcaaagtagttaactccaccaccggcccaggagagcaccttagaaatgctctctgg
cacacgggcaacaccgcaggacaggtccgcactctctggcacgaccctaaaaatatcggc
tggaaagacttcactgcctacaggtggcatctgattcacaggccaagaacaggactgatc
agagttgtgatgtatgagggtaagaagatcatggcagattctggtagcatctacgacaag
acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca
gacctcaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
