KEGG   Xiphophorus maculatus (southern platyfish): 102224496
Entry
102224496         CDS       T02923                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102224496 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xma03041]
    102224496 (smndc1)
Spliceosome [BR:xma03041]
 Complex A
  U2 snRNP components
   U2 related factors
    102224496 (smndc1)
 Complex B
    102224496 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    102224496 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2730
Other DBs
NCBI-GeneID: 102224496
NCBI-ProteinID: XP_005804942
Ensembl: ENSXMAG00000012755
UniProt: M4AE86
LinkDB
Position
22:complement(17274987..17278962)
AA seq 238 aa
MSEDLVKQLSSYKAQLQQVEVALSTDPDNEDLLKLQKDLQEVIDLTKDLLTSQPIDGASS
TSGSESVPVKKSWKVGERCLATWSQDGQVYEAEIEELDRENGTAAVTFTEYGNAEVIPLQ
NLKVVEEGKRNEDDGGLKSKSRKEQIAEQREYKKKKAQKKVQRMKELEQEREEQKSKWQQ
FNNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggaagatttggtgaaacagttgagcagctacaaagctcagctacagcaagtagaa
gttgccttatcaaccgatccagataatgaagacctcctaaaacttcagaaggacttgcag
gaagtcatcgatctgactaaagatctcctgacttcgcaacccattgatggggcttccagc
accagcggctcagagtcggtgccagtgaagaagagctggaaagtgggtgaacgatgtttg
gcaacgtggagccaggatggccaggtgtatgaagctgagattgaggagttagaccgagag
aacggcactgcggccgttacgttcacagagtacgggaatgctgaagtgattcctctgcag
aacctcaaagtcgtggaggaagggaaacgaaatgaggatgacggaggtttaaagtcaaag
tcaagaaaagagcaaatagcggagcagcgagagtataagaagaagaaagctcagaaaaag
gtacagaggatgaaggagctggagcaagagagggaggagcagaagtctaagtggcaacag
ttcaacaacaaagcttactcaaagaacaagaaaggacaggtaaagaggagcatatttgca
tcgccagaaagtgtaaatggaaaggtgggagtgggaacatgtggcattgcagacaaacct
atgacccagtataatgacacatccaaatataatgtcagacatctgatgccacaatga

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