Xiphophorus maculatus (southern platyfish): 102225738
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Entry
102225738 CDS
T02923
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03440
Homologous recombination
xma03460
Fanconi anemia pathway
xma04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102225738 (brca1)
09124 Replication and repair
03440 Homologous recombination
102225738 (brca1)
03460 Fanconi anemia pathway
102225738 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xma01009
]
102225738 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xma04121
]
102225738 (brca1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102225738 (brca1)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102225738 (brca1)
Enzymes [BR:
xma01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102225738 (brca1)
Protein phosphatases and associated proteins [BR:
xma01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102225738 (brca1)
Ubiquitin system [BR:
xma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102225738 (brca1)
Multi subunit type E3
BRCC complex
102225738 (brca1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102225738 (brca1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102225738 (brca1)
BRCA1-A complex
102225738 (brca1)
BRCA1-B complex
102225738 (brca1)
BRCA1-C complex
102225738 (brca1)
BRCA complex
102225738 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
102225738 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-Nse
RING_XB3-XBAT31
zf-RING_5
RTT107_BRCT_5
zf-MIZ
zf-ANAPC11
zf-rbx1
zf-RING_10
zf-RING_4
zf-RING_6
TRAF3_RING
PTCB-BRCT
zf-PARP
Motif
Other DBs
NCBI-GeneID:
102225738
NCBI-ProteinID:
XP_023197131
Ensembl:
ENSXMAG00000009949
LinkDB
All DBs
Position
10:6723689..6797227
Genome browser
AA seq
1378 aa
AA seq
DB search
MSCGKTEADKLYVDAYKLSENKPFKITMTTPKATDVKKGISVLWETLQCPICLDLMSAPV
STKCDHQFCKFCITKLLDNSKQNRANCPVCKFKITKRSLQESPGFQRLVAGLQEMIQAYE
HDTCTNYFTGLPQQRKNTKNTETSKDAWDLSFGDPSGIEQNNKGTEHRNDSPQSCSSTVA
AQNGFAQLMGLEDSASVTAENEGLDSGLGDVPPTSDKKMSDNLEPETANVGKNAMDASKN
KRLKRKPEKASNCLDSTQEEPGQQNVRKSSRKKQKNDLEHNKILEQKKKKSLEKVAEWLL
KVPAEEELELEKPLHSEDDSDSSSSSLILDVEPQNVELNPKRKHRGKAIEEQVFGIIYKR
RGSKVTEQLTAKEIETCKRFSKLKKKNNVRLCEERQTVENDTGSDFFKELEQMAVEEKVE
ETVEKLNQKVSDKYKGEHEVPVADFIQPETTAPTRRTCKSLQQPESDLQEQTQLKSKGTD
KKSDCRKEKNSKLSRKKPTKVAKPLVLVEVQDRETSPKPSERVKEVEVQIETYPSSEEQI
TPVMKSARKSRRLQLFVDEVHGSHNKKTNKVTATKTDKVAKKQYDETMDATPSKSGNLMK
EAKRNRCVTEEDIGVIENVEKRGRMSLSQAEAEVPEAQTLAKPECTVSVVPNSTSPTDPS
IVGPTLESEKQENNCPPGSQQETFANVEEYEDGKNDSELDTEQLLQSFKASKRKSFLLGD
PNAKRSRSLDVENAEGSQHNCSSAELSENINQVSKSNCSDVISPSNSPSKIRKPDQALLD
ASNPDGNCPSRSNVGSGLSPNKVAKCDRDSPLSVVPQVVDSGLRFIAVEQEAANASQGNY
DLTEIPDGISKCPSDNKTETIFVGESSLTPDQEVKEANGSGEVSTQSSIQTNQKKKRKTQ
RLESSSESSSSSKEELLTLAQIFGTSDHPQAEIKHQGEIGEANRLEGVGEEPLGRPAGSL
TPDQLDSSQASVDLFGTPEECDAPEKCVGVCFESSQFSSEVLVTQQKIEMQKELVRLEKL
MALVSEVLQGKEGSPAAETNRGCENKGLELDEQDQVQSSDRTDILDAETKAPDDKVAERG
GFSGTAVQDLTHAESIVKDTKTPNSISATKTVKTCDSPPDCQEDKENNSPPIEKSKAKLV
LVSSGLGPNEQIMVKKFAKRVGGRVVSRVTPEVTHIVMRTDDQLVCERTLKYFLGIAGRK
WVVSFQWISECFKEKKLLKESSFEVRGDVVNGPNHQGPLRARTAGDSNLLMKGYKICFKG
PFPDMSTDEMEWMVELCGATVVKDPLVLDGEQKSHQIVIVQPRSDSSSSSCYGGEYFLKT
KPRFHLHVDSARIVTPSCVTPTHFQHLTTRQERQQWLHNSRFNPRLSRNKCKRLYFKT
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgagttgcgggaaaactgaagcggataagctttatgttgacgcctacaaactgtcagaa
aacaagccttttaaaatcactatgacgaccccaaaagccaccgatgtcaaaaagggaatc
tcagtcctctgggaaactcttcaatgtcccatttgcctggatttaatgtctgcaccggtt
tctactaaatgtgatcaccagttttgcaaattttgtattacgaagcttttggacaactcc
aaacaaaacagagccaactgcccagtgtgtaaattcaagataacaaaaaggagcctgcag
gagagccctgggtttcagaggcttgttgcaggacttcaggagatgatacaagcatatgaa
catgacacctgcacaaactactttactggactgccacagcaaagaaagaacactaaaaat
acagaaacaagtaaagatgcatgggatttatcatttggagacccatctggaattgaacag
aacaataaaggaactgaacaccgaaatgattctccacagtcctgctcctcaactgtagca
gctcagaatgggtttgctcagcttatgggacttgaagactctgcatctgtaacagcagaa
aacgaaggcctggatagcggcctgggtgacgtcccaccaacatctgacaagaaaatgtca
gataacttggaaccagaaactgcaaatgttggaaaaaacgcaatggatgcgtctaaaaac
aaaaggctgaagcgcaaaccggagaaggcctctaactgtttagattcaactcaagaggaa
cctggtcaacagaatgtccgaaagtcctctagaaagaaacagaaaaatgatttggagcac
aacaagattcttgagcagaaaaagaagaaaagtttggagaaagtcgctgagtggctcctc
aaagttccagccgaagaagagctggaactagagaaacccctccacagcgaagacgattcg
gatagcagttcgtcttcgttgatcctggacgttgagccgcaaaacgttgaattgaatcct
aagagaaaacatcgtggcaaagccattgaagagcaggtttttggcatcatctacaagcga
agaggaagcaaagttaccgagcagctaacggctaaagaaatagaaacttgtaaaagattt
tcaaaactgaagaagaaaaacaatgtccgcctttgtgaagagcgacaaacagtagaaaat
gacactggcagtgacttttttaaagaattggaacagatggcggttgaggaaaaggttgag
gaaactgtggagaagttgaaccagaaagtaagcgacaaatataagggggaacacgaggtt
cctgttgctgatttcatacaaccggaaactacagcaccaacgagaaggacttgcaaaagt
ctgcaacaacctgagagtgatttacaagagcagactcagttgaaatcaaaaggtactgac
aagaaaagtgattgtcggaaagaaaaaaattcaaagttaagcagaaagaaaccaactaag
gtggcaaaacctcttgtgttagtcgaagttcaggacagggaaacgagtcctaaacccagt
gaaagagttaaagaagtcgaagttcaaatagagacttatcccagcagcgaggaacagata
actccagtcatgaagagcgccagaaaaagcagaaggcttcagctttttgttgacgaggtt
catggaagtcacaacaaaaaaaccaataaagttactgcaactaaaacagacaaagtcgct
aaaaagcaatatgatgaaacaatggatgcaactccatctaaaagtggaaaccttatgaag
gaagctaaaagaaacagatgtgttactgaggaggatatcggagtgatagaaaatgtagaa
aagagaggaagaatgtctttgtcacaagctgaagcagaggtacccgaagcacaaacgcta
gctaaacctgaatgtactgtctctgtggtcccgaactccacaagtccaaccgatccatcc
atcgtaggtccgacgcttgaaagtgagaagcaggagaataattgcccacctggctctcag
caggagacatttgctaacgttgaagagtacgaggatggcaagaacgacagtgaactggac
acagagcaacttctccaaagcttcaaagcttccaaacggaaatctttccttcttggggac
cccaacgcgaagaggagtcgcagtttggatgtggaaaacgctgaagggagccaacataac
tgttcaagcgctgaactatcagaaaatataaaccaggtttcaaaatcgaattgtagtgac
gtgatttccccttccaactcgcccagtaagattagaaaaccagatcaagctctactggac
gcttccaatcctgatgggaactgtccatccaggagcaacgtcggcagtggtctcagtcca
aacaaagtggcaaagtgtgacagagacagtcctctgtctgtcgtccctcaggttgtggac
tctggcctccgcttcatagctgttgaacaggaagcagcaaacgcttcccagggcaactac
gacctgacggagatcccagacggcatttcaaaatgtccttcggataacaaaaccgagaca
atttttgttggagagtcttctttaaccccggaccaagaggtcaaggaagccaacggcagc
ggagaagtcagcactcaatcctccatccagaccaaccagaagaagaagaggaagactcag
aggctggagtcttcatcagagtccagcagctcatctaaagaggagttactgactttggcg
cagatctttggaacatcagaccatcctcaagctgagattaaacatcagggagaaatcggc
gaagctaacagattggagggagttggtgaagaaccactgggtcgtccagctggaagtctg
accccagatcagctcgactccagccaggcatccgtcgacttgttcggcacaccagaggaa
tgtgacgcccctgaaaagtgcgtcggcgtttgctttgaatcgtcacaattctcaagcgaa
gttcttgttactcagcaaaagatagaaatgcagaaggagctggtgaggctggagaagctg
atggctctcgtgtcagaggtgcttcaggggaaagaaggcagtcctgctgcagaaaccaat
cggggctgtgaaaacaagggtctagaactggatgagcaggatcaagtccagagttcagac
aggacagatattttagatgcagaaaccaaagcacctgatgataaagtggcagagcgtggt
ggcttttcaggaaccgctgttcaagacttgactcatgcagaatcgattgtaaaagacaca
aaaacccctaattcaatttctgcaaccaaaacggtgaaaacttgtgattcacctccagat
tgccaagaagacaaagaaaacaacagccctccgatagaaaaatctaaagctaaacttgtt
ctggtgtcgtccggattgggcccgaatgagcagataatggtgaaaaagtttgccaagaga
gtcggcggtcgcgtcgtttcccgggtgacaccagaggttacgcatatcgtaatgcgcaca
gatgatcagctggtctgcgaacgcacactgaaatacttccttggcattgcgggtcggaaa
tgggtcgtcagcttccagtggatttctgaatgcttcaaggaaaagaaactgttgaaagag
agttcgtttgaagtgagaggcgatgtggtgaacggaccgaaccaccaggggccgttaaga
gcccgcaccgcaggagacagtaatctgctcatgaagggatacaagatctgcttcaagggg
ccgtttccagacatgtcaacagatgagatggagtggatggtggagctgtgtggcgctact
gtagttaaagacccacttgtccttgacggcgaacagaagtcccaccagatcgttattgtt
cagcccagatccgactcatcgtcgtcgtcctgctacggcggtgagtattttctgaaaact
aaacctcgttttcacctccatgtcgactcggcccggatcgtcacaccttcctgcgtaact
ccgacacatttccagcatttaacgacgcgacaggagcgtcagcagtggttgcataattca
aggttcaatccgaggttatccagaaataaatgtaaaagactttattttaaaacgtga
DBGET
integrated database retrieval system
