Xiphophorus maculatus (southern platyfish): 102227033
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Entry
102227033 CDS
T02923
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102227033 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102227033 (tardbp)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102227033 (tardbp)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
102227033
NCBI-ProteinID:
XP_005808264
Ensembl:
ENSXMAG00000011345
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Position
1:12635043..12641656
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AA seq
396 aa
AA seq
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MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVSAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPESSWGNLVYVVNYPKDNKRKMEEIDAASAVKIKRGFQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVIAQRHMIDGRWCDCKLPN
SKASPDEPMRSRKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYSSNRGGLSSGSGGV
NFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTASTTRDQTYSSASTSYSSP
SSASLGWAGGTNTASSSGFSSGFGTSMESKSSSWGM
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagctgtacattagggtggctgaggatgagaacgaggagcccatggagatcccc
tcggaggacgatgggactgttctactatcctcggtatcagcccagttcccgggggcttgt
ggtcttcgctacagaaacccggagtcccagtgcatgaggggggtccggctggtggagggc
gtcctgcatgcaccagagagcagctggggaaacctggtctatgtcgtcaactatcccaaa
gataacaaaaggaagatggaggaaatagacgcggcgtcggctgttaaaattaaaagaggt
tttcagaaaacgtcagacctcatagtcctcgggttgccttggaaaacaacagaacaagac
ttgaaggattattttagcacctttggggaggtcattatggtgcaggtgaagagagatgca
aaaactggcaactcaaaaggttttggcttcgtccgctttgcagactatgagacgcaaact
aaagtcattgctcagagacacatgattgacggacgatggtgtgactgcaaacttccgaac
tcaaaggcatctcccgatgaaccgatgcggagccgcaaaatctttgttggccgctgcaca
gaggacatgacgacggacgatctgaggcagtacttcatgcagtacggggaagtcactgat
gtcttcattcccaaacctttccgggcctttgcatttgtcacgtttgctgatgatcaggtc
gcccaggctttgtgcggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gctgagcccaaacacaataacagtaggcaaatgatggatcggggtcggtttggggctggc
gggttcagtcaggggtacagcagtaatcgcggggggctaagcagcggtagtggaggggtt
aactttggggctctgggccttaacccagcaatggtggcagcagctcaggcagcactgcag
agcagctggggaatgatgggcatgctggctaaccagcagggcttgaccacagcggcaggc
acagcctctaccaccagagatcagacgtatagctctgccagcaccagctacagcagcccc
agctcagccagcctgggctgggccggaggcactaacacggcctccagcagcggcttcagc
tccggctttggcacgtcaatggagtctaagtcttctagctggggaatgtag
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