Xiphophorus maculatus (southern platyfish): 102232233
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Entry
102232233 CDS
T02923
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102232233
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102232233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
102232233
NCBI-ProteinID:
XP_005810921
Ensembl:
ENSXMAG00000011235
UniProt:
M4A9W2
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All DBs
Position
23:complement(16484825..16739906)
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AA seq
985 aa
AA seq
DB search
MDSRQRKRSGGGTLWRIYLYLACVCSASAELRYSVSEELKPGSVVGNIAKDLSYTAQSIV
QRNLRVVSESAVEYFEVKQATGDLIIKQKIDREQLCELSPTCSQQIQIMLEDPLEIHRVM
VDILDVNDNAPQFSTSNISLEVSEAAAPGTRFRLESAHDPDVGTNSLRTYHVATNDFFAL
NVQAKSDGSKFPELVVDKPLDRETQASFRLLLTAVDGGQPEKSGSTLLLIKILDVNDNAP
VFAETVTKVTLSENVAQGTLVTKLNATDADSGSNGEISFLFSKYTPERVLQLFTVDSKSG
EIRVKGDVDYEKAASYHITVQARDGGYPAMEGSCNVIVDIIDVNDNAPEVTLMSPTSSIR
EDSPPEKMIAVITAKDLDSGDNGKVTLTIPPGLPFKLILAFDGHYSLKTAGSLDRETVPE
YTVVIKATDAGSPPLSSQKTFVVKLLDVNDNAPSFSQPSYSVDLPENNSPSSPIAAVSAT
DADLGENARISYAILPSMVQDSPISSYVYINPETGHIYSMRSLDHEKLNAFRIQVQARDA
GEPPRATNVTVHVFVVDVNDNSPVIVHPSYPKDKRLQLTVPPSAGPGHIINKLVAVDADS
GHNAWLFYSIAPGPNVGMFRIGAHTGELRTARKWAEEEVGSTYDITVIIQDNGDPPRSSS
VNITITVEEKSTAIDVPVNTRHNHFYHHNGMSNITLYLIISLACVSGVAFITFMVLMVRC
LRHRDSGLGDSECCCYGHHRSSRYHQRPSKDLHLQLNTDGPIRYMEVVGGPQEPHTRTYR
PCYSTISSRSDFVFMKTPMLSHNNTLNMTLSRKNLMNSAIEQKPPNNDWRFTQGQRPGPS
GPHMPYGTHIRWTPKNGTRATGGPEVAMGTGPWPQPPTEAEQLQALMAAANEVSEATATL
GPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQATAQQATQQALPPPQA
SAQAEPPKAAQTPASKKKSTKKEKK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggactccaggcagaggaagcgctccggaggagggacgctgtggaggatttacctctat
ctggcctgcgtgtgctcagcgtccgctgagctcaggtattccgtatcagaggaactaaag
ccaggctcggtggttggaaacatcgcgaaagatctgagctatacggctcagagtatcgtc
cagaggaatttacgggtggtctccgagtcagcggtggagtatttcgaggtgaaacaggca
actggtgatttaattattaaacaaaaaattgacagggaacaactgtgcgaactgagtcca
acgtgttcgcaacaaatacaaattatgctggaggacccactggagattcatcgcgtcatg
gtggacatcctggatgtgaacgataacgcgccgcagttttcaaccagcaatatttctctg
gaggtgtcggaggcggccgcgccgggcacgcggttccgcctggaaagcgcacacgatcca
gacgtgggcaccaactccttacgcacgtaccatgtggctacaaatgacttttttgcactg
aatgtgcaggctaagagtgacggcagcaagtttccagaacttgtcgtggataaacctctg
gacagagagacacaggcctcctttcgcctgttgctcactgccgtggatgggggtcagccg
gagaagtctggctcaacacttttgctcattaaaattttggatgtaaatgacaatgctccg
gtttttgcggagacggtgacgaaggtgacgctgtcggaaaacgtcgcacagggcacttta
gttacaaaattaaatgcgactgacgctgattctggcagcaacggtgaaatatcattcctg
tttagtaaatacacaccagaacgtgttctccagctcttcactgtggactccaagagcggg
gagatccgtgtgaagggggatgtagactacgagaaggccgcatcttatcacatcacagtg
caggccagagatgggggataccctgccatggagggttcctgtaacgtcatagtggacatc
atcgatgtgaatgacaacgccccagaggtgacactgatgtcaccgaccagctccatcaga
gaagactcgcctccagagaaaatgattgctgtcataaccgctaaagacctggactctgga
gacaatggaaaggttacattaaccatcccaccaggtttgccatttaaacttattttagcc
tttgatggccattatagtttgaaaactgctggcagcctggacagagaaactgtcccagag
tacacagtggttatcaaggcgactgatgctggctccccacccctctcatctcagaaaact
tttgtagtgaagctcttggatgtaaatgacaatgctccatctttctcccagccttcatac
tctgtggacctccctgagaacaattcccccagctccccgatcgctgccgtttctgccaca
gacgccgatctgggtgagaatgctcggatctcctatgccatccttcccagcatggtccag
gattcgcctatttcttcttatgtgtacattaacccagaaactggccacatatacagcatg
cgctcccttgaccatgagaagctcaatgctttccgcattcaggtgcaggcccgggacgca
ggggaacccccacgggcaacaaatgtcactgtacatgtctttgttgtggatgtgaatgac
aactcaccagtgattgttcatccctcctacccaaaagacaaaagactgcagctcactgtg
cccccatctgctggcccaggccacatcataaataaactggtggcagtggatgcagacagt
gggcacaatgcgtggttgttttactcaatcgctcctggaccaaatgttggcatgttccgt
atcggggcccacaccggggagctccgcacagcccgcaaatgggccgaagaggaagtgggc
tctacttatgacataacggtcatcatccaggacaatggtgacccaccgaggtccagctcg
gtgaacatcaccataactgtggaggagaaatccacagccatcgacgttccagtgaacact
cgccacaaccacttctatcaccataacggaatgtctaacatcactttatatctcataatc
tctcttgcatgtgtgtcgggtgtagctttcatcacatttatggttctcatggtgcgctgc
ctaaggcaccgtgactcagggctgggagactctgaatgctgctgctatggccaccacagg
tccagccgctaccatcagaggcccagcaaagacctgcacctgcagctcaacaccgatgga
cccatacgatacatggaggtggtgggagggccccaggagccacacacacgcacctatcga
ccctgctactccactatatctagtcgaagtgactttgtatttatgaagacacccatgctg
agtcataacaacacgctcaacatgacgctcagcaggaagaacctcatgaactcagccatt
gagcaaaagccccccaacaatgactggcgcttcacgcaaggacagaggcctggacctagt
ggtccccacatgccgtacggtacacacatacgatggacgccgaagaatgggacaagggca
actggaggacctgaggtagccatgggaactggcccttggccccagccccccaccgaagcc
gagcagcttcaggcactgatggcagcagccaacgaagtaagtgaggcgacggccaccctc
gggcccggcaccatgggcttgagcacccgctacagcccccagttcaccctgcagcacgtc
cccgactaccgccagaacgtctacatccccgggagcacggccaccctcacctccaaccct
cagcagcagcaggctacggcccagcaggccacgcagcaggcgctgcctccgcctcaggcc
tcggcacaggctgagcctccaaaggccgcccagacccccgcctccaagaagaagtccacc
aagaaggagaagaagtag
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