Xiphophorus maculatus (southern platyfish): 102236898
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Entry
102236898 CDS
T02923
Symbol
thbs1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04115
p53 signaling pathway
xma04145
Phagosome
xma04148
Efferocytosis
xma04350
TGF-beta signaling pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102236898 (thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102236898 (thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102236898 (thbs1)
04148 Efferocytosis
102236898 (thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
102236898 (thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102236898 (thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102236898 (thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102236898 (thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102236898 (thbs1)
Membrane trafficking [BR:
xma04131
]
Endocytosis
Phagocytosis
Opsonins
102236898 (thbs1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102236898 (thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
EGF_CA
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
102236898
NCBI-ProteinID:
XP_005797804
Ensembl:
ENSXMAG00000014279
UniProt:
M4AIQ8
LinkDB
All DBs
Position
19:complement(9781953..9790355)
Genome browser
AA seq
1172 aa
AA seq
DB search
MMLCGILFLLMLWSCDGARLAETRDDNSVYDLFELARVSKRHNGVSLVKGADPYSPAYKV
LNADLIPPVPDASFRDLLDSIQAERGFLLLLNLKQSKKTRGSLLTVEKTDGSGPIFEIIS
NGKANTLDLVYSTERQLQVVSIEDAGLANGHWRNLTLFIQEDRAQLFVGCEEINVSELDV
PIQTLLSRELADRARLRIGKGAVKDKFMGVLQNVHFVFGTSLDAILTNKGCKSGAALTQM
MTLDNPVNGSSPAIRTDYTGHKSKDLQTVCGFSCEDITSMFKELRGLNVIVKQLSNELQK
VSTDSELLKNQIIIHNGVCIHNGIVHKDKDEWTVDGCTECTCQNSATICRKISCPLIPCA
NATVPDGECCPRCGTPSDFPEGGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG
RHTKVCQMSPCPINGEWGPWSPWDTCSATCGGGVQTRNRLCNDPMPKYGGKDCIGDATMV
QICNKQDCPIDGCLSNPCFPGTKCTSFRDGSFECGKCPLGYIGDGITCTDIDECKEVPDA
CHTHNGIHLCENTEPGYNCLPCPSRFSGPQPFGRGVEQATAKKQVCTPRNPCKDGSHNCH
KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDRIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQVDSDSDRIGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIHDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatcctttttctgctgatgctttggagttgcgatggtgccagattg
gcagagactcgcgatgataacagtgtgtatgacctatttgagctggcgagggtgagcaaa
agacacaacggagtgagtctagtcaaaggcgcagacccttacagtcccgcatacaaggtc
ctgaacgcagacctgatccccccagtccccgacgcctccttcagggacctcctcgattcc
atccaggccgagcggggattcctcctattacttaacctgaagcagtccaagaaaactaga
ggcagccttctgacagtcgagaagaccgacggatctggccctatcttcgagataatttct
aacgggaaggcgaacactcttgatctggtctactccaccgagaggcagctgcaggtggtg
tccatcgaagatgccggcttggcgaatgggcactggaggaacctcacgctgttcatccag
gaggacagggcacagctttttgtgggctgtgaagagatcaatgtgtcagagctggatgtg
ccaatccaaactttactgtccagggagttggcagatagagccagactcaggattggaaag
ggggcagtgaaggacaagtttatgggagtcctccagaatgtccattttgtctttggaacc
tctctagatgccatactgaccaataagggatgtaaaagtggagctgctttaacccaaatg
atgaccctggacaacccagtcaatggttccagtcctgccattagaaccgattatactggc
cacaaatccaaagatctgcagactgtctgcggtttctcatgtgaggatattaccagtatg
tttaaggagctcaggggactcaacgtgattgttaagcagctgtcaaatgaactccaaaaa
gtgtctactgatagtgagttactgaaaaatcagatcatcatccacaatggagtctgcatc
cataacggcattgtgcacaaggacaaagatgaatggacagtggatggctgcacagagtgc
acctgtcagaactctgcaaccatatgtcgcaaaatctcttgtcctctcatcccctgtgcc
aatgccactgtgcccgatggagaatgctgcccacgctgtggaacaccgagtgactttccc
gagggtggttggtctgcctggtctgactggacccattgttctgtgacttgtggtcgtgga
atccagcagcgtggacgctcctgtgatcgcatcaacagcaagtgtgagggcacctctgtc
cagacccgtgactgctacccgcaggaatgcgacaagcgcttcaagcaggatggaggctgg
agccactggtcaccctggtcttcatgctctgtgacttgtggcgaaggggtcatgacacag
atccgtctctgcaactcccccacaccgcagatgggtggtagagactgccaaggagaagga
cgtcacaccaaagtctgccaaatgtcgccttgccccattaatggagaatggggaccttgg
tcaccatgggatacctgctcggcaacctgtggtggaggagtccaaacaagaaaccgtctc
tgcaatgatcctatgcctaaatacggaggaaaagattgtattggtgatgctaccatggtt
caaatctgcaacaaacaggactgccctattgatggttgcctttccaacccatgcttccct
ggtacaaagtgcaccagtttccgtgacggctcatttgagtgtggcaagtgcccacttggc
tacattggtgatgggattacctgcacagacattgatgaatgcaaagaggtcccagatgct
tgccatactcacaatggaattcatctttgtgagaacactgagccaggttacaactgcctc
ccctgtccttcccgtttctctggtccccaacctttcggaagaggtgtggaacaggcaact
gctaaaaaacaggtgtgcactccccgcaacccttgcaaggatggtagccacaactgccat
aaaaatgcgaactgtatatatttgggcgtctactccgagtcaatgttccgctgtgaatgc
aagccaggatatgctgggaatggccggatttgtggagaggacagtgacctggatggatgg
cctaacacggatctgccgtgtgtggagaacgccacttatcactgcaaaaaggataactgc
cccaaccttcccaactctggccaggaagaccatgacaaagatggccttggggatgaatgt
gaccatgatgatgacaatgatagaattcccgatgatagggataactgtccaagagtgtac
aaccctgctcagtatgatgcagacagggacgatgttggtgaccgctgtgacaactgtgtg
tttgaggctaatactgaccaaacagacacagacaacaatggagagggagatgcctgtgct
gtcgacattgatggtgatggtattctgaatgagaatgacaactgcccatatgtgtacaat
gttgaccagagagacacagacagggatggtgttggagatcactgtgataactgtcccctc
gagcacaacccagaccaggttgactctgactcagatcgtattggagacaagtgcgatagc
aaccaggacattgatgaggatggtcaccagaacaacttggataactgcccatacattccc
aatgccaaccaggccgaccatgacaaagatggcaaaggtgatgcttgcgaccatgatgat
gacaatgacggtattcctgatgataaagacaactgccgattggcttttaaccctgatcaa
ctggactctgatggtgatggccgtggagatatttgtaaggatgattttgaccaagacaat
gtcctggacatccatgatgtttgtcctgagaactttgccatcagtgaaacagacttccgc
agattccaaatggtacccttggatcccaaaggcacctctcagattgaccccaactgggtg
gtgaggcatcaaggcaaggagctggtgcagactgtcaactgcgatcccggcattgctgtt
ggttacgatgagttcagtgccgtggatttcagtggaacgttcttcatcaacacggacaga
gatgatgactatgccgggtttgtgtttggctaccagtccagctcccgcttctacacagtg
atgtggaaacagatcacacagacttactggtcccacacacccactagagctcaaggctac
tctggcttgtcaatcaaagttgtaaattccaccacagggcctggcgaacatctcagaaat
gctctgtggcacaccggagacaccgcaggacaggtccgtactctgtggcacgaccccaag
aacattggctggaaggactttactgcctatagatggcacctaacccatagacccaagact
ggacttattagagtggtcatgtatgaaggcaagagaatcatggcggattctggaaacatt
tatgataagacatatgctggtgggcgactaggcttgtatgtcttctctcaggagatggtt
tacttctcagacctcaaatatgaatgtagagatacataa
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