Xiphophorus maculatus (southern platyfish): 102238347
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Entry
102238347 CDS
T02923
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102238347 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102238347 (smg6)
03032 DNA replication proteins [BR:
xma03032
]
102238347 (smg6)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102238347 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
102238347 (smg6)
DNA replication proteins [BR:
xma03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102238347 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
102238347
NCBI-ProteinID:
XP_014329305
Ensembl:
ENSXMAG00000010321
UniProt:
M4A799
LinkDB
All DBs
Position
11:30839644..30853627
Genome browser
AA seq
1618 aa
AA seq
DB search
MANELERVRISAAELRAETTNSLQMTDRLNEEQQERKKHKQHKRREAKRPDLQRYQPAAG
HGRCHQDSEEGETGQRDFLDAKAQHSDQSSMSGKRVSEDVLDKKGCTDLSGTKNKDEDRM
RGDGSNSLNYKQGTQSLGKIDANSENDKEQQDASGAPKPAKKVRKPDREFYQPGSRRNVQ
GKDCSVGRELDKLSPNKQGLTLEPESQLSAGEGNSKKSIPKHRGKDKVKFSDSIEETTEQ
GRQTVDQTVEKIMSKVERLNIKEKGEVGSPSNNVGDVACTRREKESSAQGGEIKCQEEKT
DRKEKGNRRRRGGEKEKKEEIETHLESQREEEANQSRKHNQRKLEKEKDKRAPNTDRRKS
EKPGEPHHSKRNDNPRENHKIKDNNSNFKDTEKAAKTGSHRDRVVAERDRHRSNLNATTP
NSKRYSKSNIRHSRNRTYSSSSASSVTSQDGPRRHMGMEGVKWPRLPGQNNKELGDTCEG
PRRHSSTESLDRSEVCDREEADRRRRRRKSVGKEEISAVKRGEEWKTSNKSGGRGILRVS
LDNQSPVTKDSPVPRGRGRGILVLPARTDISNSPEVGQRLFSTGTRGGAAGRTRGGRGGG
VRRLWDPNNPDQKPALTNTQTSKHAALKQPLYLQSGTGFGQLHFLDTDDELSGSPPVAQG
DHFQSQQAAAMAYYKFQNSDNPYCYPIATNSPNSTAGQRYPHPYNMGPYQMAHPNGMYPS
PGTSPFSGSYRGAGYSQPRVAGGLTFEEDLGRMLKAADAHELQLSNLISRDRVSADGLDR
MSQLRADLLGLYERIILTDIEFSDSQNVDQALWKNVFYQVIERFRQLLKDPSCDNTHDIR
NMLLTLLDEGALFFDALLQKLQAVYQFTLEDYMDGMAIRTRPLRKTVKYALISAQRCMIC
QGDIARYREQATNSANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVCYYMR
SLAASNPILTAKESLMSLFEEAKRKAEQFERRRRQEQEGGSQGPAVKGRRKWDDGARVEI
WIRPSGQTTTPSSQRGGSESSRDSEQDGELGSLTATELNKRFILSFLHAHGKLFTKVGME
SFPGVASRVLQEFKTLLQHGPSLLGFTNLLQIITINMFAIYNAHSRGEEGDVRSVLLEQS
TALGLDMFALLVQRCTELLKETPAETVPMTDGEEEGKTEERQGMVRVSAFPLDLRELLPS
IKVWSDWMLGHPEEWNPPPCSLECSPDVWQCLADLCNALARVDHEEMLLYKVDTDEGEGD
EELTVLQLKEDKLLAGFVPLLAAPQEPCYTDKHTDMAIAADCKRVTVLKYFLEALCGQEE
PLLAFKGGKYVSVATSSSPNHSEDTRSRQDSLTEKESDDVILEAESSLSGSEEEEDFEEA
GESENDIKELKARRHALANKLAQQQKRRDKIQAVLQTGGQLELEVRPLFLVPDTNCFIDH
LDRLKNLLQCGTYIIVVPLIVITELDGLAKGQEPFGGAVGTGGRSSGSRGNYNVSVAHMR
AVQEQARSAVAFLEKGFEAREPCLRALTSRGNQLESIAFRSEDTSGQQGNNDDVILSCCL
HYCKDKAKDFMPPQRNGTVRLQREVVLLTDDRNLRVKALTRNVPVRDIPSFLSWAKVG
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgagctggaaagagtacgaatctcagctgcggaacttcgcgcagaaactaca
aattcattgcaaatgactgatcgtttgaacgaggagcaacaggaacgcaaaaaacacaag
cagcataagcggcgtgaagcgaaacgtcctgatctgcagcgttaccaaccagcggctgga
cacggacgctgtcatcaggacagcgaggaaggagaaactggtcagagggattttctagac
gccaaagcgcaacatagtgatcagtcatcaatgagtgggaaaagagtctctgaagacgtt
ttagataaaaaagggtgcacagatctctcaggtaccaaaaacaaggatgaggacagaatg
agaggcgacggcagtaacagcctgaactataaacaaggcacccagtctctgggtaaaatc
gatgcaaacagtgaaaatgacaaagaacaacaagatgcttcaggagctcctaaacctgca
aagaaagtccgcaagcctgacagagagttctatcaaccagggagccgcagaaacgtgcag
ggaaaggactgcagtgttggaagagagctggataaactttcccccaacaaacaagggcta
accctggagccagagtctcagttgagtgcaggcgaagggaacagtaaaaaatcaataccc
aagcatagagggaaagataaggtaaaattttctgactctattgaagaaactacagagcaa
ggaagacaaactgtggaccaaacagtggagaaaattatgagcaaagtagaaagactcaac
ataaaagagaagggggaggtagggagcccaagtaataatgttggagatgtagcttgcaca
agaagagaaaaagaaagtagtgctcaaggtggagaaatcaaatgccaggaagaaaagaca
gatagaaaggagaaaggtaaccgtcggagaagaggaggagagaaggagaaaaaagaagaa
attgagacacatctggaatcccaacgagaagaggaagctaaccaaagtagaaagcacaat
cagcggaaacttgagaaggaaaaagacaagagagctcctaatactgacaggagaaaatct
gaaaaaccaggagagccacaccacagcaaacgaaatgataatcccagagaaaatcataaa
ataaaggacaacaacagcaactttaaagacactgaaaaagctgctaaaacagggagccac
cgagacagggttgtagcagagcgtgatagacacagatctaatttaaatgccactacacca
aactccaagcgatattccaaatcaaacattcgacactcccgaaacagaacttacagcagc
agttcagcaagcagcgtaaccagccaagatggccccagacgacacatgggcatggagggc
gtcaagtggccacgccttcctgggcaaaacaacaaggagttgggggatacatgtgagggg
ccaaggagacactcttcaacagaatcactggataggagtgaggtgtgtgacagagaggaa
gcagataggaggagaaggaggagaaaaagtgtggggaaggaagaaattagtgcagtaaaa
cgaggggaggagtggaagacgtcaaacaaaagtggagggcgaggaatccttcgggtttct
ttagataatcagtcacctgtcacaaaggacagcccagtccctcgtgggaggggccggggt
atcttggtgctgccagcccgcacagacatctccaactcacccgaggtggggcagaggctt
ttttctaccggaacccggggaggagcagctggcaggactagaggaggccgaggaggaggg
gtgagacgcctctgggaccccaacaaccctgaccagaaacctgctctcaccaacacccag
acgtccaaacacgcagcacttaaacagccgctgtatcttcagagtgggacgggatttggg
cagcttcactttctggacacggatgacgagctttccggcagccctccggtggcgcaaggg
gatcacttccagtcccagcaggccgctgctatggcatactataaattccaaaactctgac
aacccttactgctaccccatagccaccaacagcccgaactccaccgctggccagcgctat
cctcacccgtataacatgggtccttaccaaatggctcaccctaacggtatgtacccgagt
ccgggtacaagtccattcagcgggagttacaggggagcagggtatagccagccacgcgta
gcaggcgggttgacgtttgaagaggatctgggcagaatgctgaaggctgcagatgctcat
gaacttcagctcagtaacttgatctccagggacagagtgagtgcagatggcttggatcgc
atgtcccagctcagagccgaccttttggggctgtatgagcggatcattctgacagacatc
gagttctccgactctcagaatgtggatcaggctctgtggaagaacgtgttctaccaggtg
atcgaacgcttccggcagctgctcaaagaccccagctgtgacaacacgcatgacatcagg
aacatgttgctcacgcttctagatgagggagcacttttctttgacgcgctgcttcagaag
ctgcaagcggtgtaccagttcacattagaagactacatggatggtatggctatcaggacc
cgtccattacgcaaaacggtaaagtatgcactcatcagtgctcagcgatgcatgatttgt
cagggcgatattgcacggtaccgggaacaggccactaactctgccaactatggcaaggct
cgcagctggtacctgaaagcccagcagattgcgcctaaaaatggacgcccctacaaccag
ctggctttgttggcagtttatacaaagcggaagttggatgctgtgtgttattatatgcgc
agtttggcagcctccaatcccatcctgacagcaaaggaaagcctaatgagcctctttgag
gaagccaagcggaaggctgaacagtttgagcgaaggaggaggcaggaacaggaaggaggg
tcccagggtccagcagtgaaaggaagaaggaaatgggatgacggcgcacgtgtggaaatt
tggatcagacccagtggccagaccacaaccccgtcctcacagagagggggcagtgagtcc
agcagagactcagagcaggatggagagctgggcagtcttactgctactgagctgaataaa
agattcattttgagtttcctgcatgcacatggaaagctcttcactaaagtgggtatggag
tccttccccggagtggcgagccgtgttctgcaggagtttaagactcttcttcagcacggc
ccttcactgctcgggtttacaaacctgctccagatcatcaccatcaacatgtttgccata
tacaacgcccacagcagaggtgaagaaggagatgtccggtctgttttattagaacaaagc
acagctttaggcctggacatgtttgctttgctggtgcagcgatgcactgagcttctcaag
gaaactcctgcagaaacagtacccatgacagatggagaagaggaggggaaaactgaagag
cggcagggaatggtcagagtttctgctttcccgctggacctgagagaactgctgcccagc
atcaaagtgtggtcagactggatgttaggacatccagaagagtggaacccacccccatgc
agtctagagtgcagtcccgacgtttggcagtgccttgctgacttgtgcaatgcactggca
cgtgtggaccatgaggagatgctgctgtacaaagtggatactgatgaaggcgagggagac
gaggaactgactgtgcttcagttgaaggaggacaaactgcttgctggctttgtacctctg
ctggcagcgccacaggagccatgttacacggacaaacacaccgacatggctatagcagca
gattgtaaaagagtgacggttctgaagtacttcctggaggctctgtgtggacaagaagag
cctctgttagccttcaagggaggcaaatatgtgtctgtggcaacttcttcctcacctaac
cactcagaagatacaaggagcaggcaggattcgttaacagagaaagagtctgatgacgtc
atacttgaggccgagtcatctctttctgggtcagaagaagaggaggattttgaggaggca
ggagaaagtgagaatgacatcaaggagctaaaggcacgacggcacgccctcgctaacaag
ctggcgcagcagcagaagcgcagagacaaaatccaggcggtactgcaaactggtggtcag
ttggaattggaagtcagacctttgtttttggtgccggacaccaattgcttcattgatcac
ttggacagactgaagaatctccttcagtgtggaacgtacataatagttgtgcctctcatc
gtgattacagagttggatggtttggctaaaggccaggagccttttggcggcgcagtgggg
acaggagggcggagcagtggcagtcgaggcaactacaacgtcagcgtggcccacatgcga
gccgtgcaggaacaggcccgctctgcagtggctttcttagaaaaaggctttgaagccagg
gagccatgcctcagagccctgaccagccgaggaaatcagctggagtccattgccttccgt
agtgaggacacctccggacaacagggtaacaatgatgatgtgattttgtcctgctgtctc
cactactgcaaagacaaagcaaaagattttatgcctcctcagagaaatggaacagtgagg
ctccagagagaggtggtcctccttacggatgatcgcaacctgcgcgtcaaggctttgacc
cgcaacgtccccgtgagggacatcccgtctttcctcagctgggctaaagtgggctga
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integrated database retrieval system
