Xenorhabdus nematophila ATCC 19061: XNC1_4026
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Entry
XNC1_4026 CDS
T01274
Symbol
ygdE
Name
(GenBank) putative RNA 2'-O-ribose methyltransferase, SAM-dependent domain
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xne03009
]
XNC1_4026 (ygdE)
Enzymes [BR:
xne01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
XNC1_4026 (ygdE)
Ribosome biogenesis [BR:
xne03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
XNC1_4026 (ygdE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
Spt5-NGN
MIT_C
Motif
Other DBs
NCBI-ProteinID:
CBJ92051
UniProt:
D3VCL6
LinkDB
All DBs
Position
complement(3888742..3889839)
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AA seq
365 aa
AA seq
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MNKVALYCRPGFEKECAAEITDKAGKKEIYGFARVKENSGYVLFECYQVDDADRLIREIP
FSELIFARQMLVVGELLKDLPQEDRITPIMGMLMGVIERAGELRVEVPDTNESKELMKFC
RKFTVPLRNAMRQEKLLLTKENPNRPVIHVFFIAPGCCYVGYSYSNNNSRFYMGIPRLKF
PSDAPSRSTLKLEEAFHVFIPYDEWEERLDSGLHAVDLGACPGGWTYQLVKRSMLVHAVD
NGTMAESLMETGQVKHHRADGFKFEPSAKNIYWLVCDMVEKPAKVAQLMTDWLVKSWCRE
TIFNLKLPMKKRYEEVAHILQKMEQQLKENGVNAQIQAKHLYHDREEITVHVRRIWSVYA
PNRDY
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagtagctttatattgccgtccgggttttgaaaaagagtgtgcggcagaaatt
accgataaggcgggtaagaaagaaatttacggtttcgcccgtgtgaaagaaaacagcgga
tatgtgctgtttgagtgttatcaggtggatgatgcagatcgtctgatccgtgaaattccg
ttcagtgagttgattttcgcccgccaaatgctggtcgtgggggaactgctgaaagattta
ccgcaagaagatcgcattacgccgattatgggtatgctgatgggtgtgattgaacgggcg
ggtgagctgcgtgtagaagtaccggataccaatgaaagcaaagagctgatgaaattctgc
cgtaagtttacggtgccgctgcgtaacgcgatgcgtcaggaaaaactcttgctgacaaag
gaaaatcccaaccgtcccgtgatccatgtcttcttcattgcaccgggttgctgttacgta
gggtattcctacagtaataacaattcccgtttttatatgggtatccctcgcctgaaattc
ccgtcagatgccccaagccgctcaacattgaaacttgaagaggcttttcatgtctttatt
ccttatgacgagtgggaagagcgtctggacagcggccttcatgcggtagacctgggggct
tgtccgggcggttggacttaccagcttgtgaaacgcagtatgttggttcatgcggtggat
aatggcacgatggctgagagtttgatggaaacaggtcaagtgaagcatcatcgtgcggat
ggtttcaaatttgaaccgtcagcgaagaacatttattggttggtttgtgacatggttgag
aaaccagccaaagttgcacaattgatgacggactggttagtaaaaagctggtgtcgtgag
acaattttcaaccttaagctgccgatgaaaaagcgctatgaggaagttgcacatatattg
cagaaaatggaacagcaactaaaagaaaatggtgttaatgctcaaattcaggctaaacac
ttgtatcacgatcgcgaggaaatcacggtacatgttcgccgcatttggtctgtgtatgca
cctaaccgagattattga
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