KEGG   Xenorhabdus nematophila AN6/1: XNC2_2609
Entry
XNC2_2609         CDS       T03752                                 
Symbol
ycfD
Name
(GenBank) putative enzyme with RmlC-like domain
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
xnm  Xenorhabdus nematophila AN6/1
Brite
KEGG Orthology (KO) [BR:xnm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xnm03009]
    XNC2_2609 (ycfD)
Enzymes [BR:xnm01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     XNC2_2609 (ycfD)
Ribosome biogenesis [BR:xnm03009]
 Prokaryotic type
  ribosomal protein modification factors
   XNC2_2609 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 AraC_binding
Other DBs
NCBI-ProteinID: CEK23603
LinkDB
Position
I:2671626..2672747
AA seq 373 aa
MDYQLNLDWQAFLQNHWQKRPLLIKQGFRQFIDPLSPDELAGLAMENEIDSRLVSQKNGR
WEVSHGPFETYDHLGAKDWSLLVQAVDHWHLPSSALMRPFRVLSDWRMDDLMVSFSVPGG
GVGPHLDQYDVFIIQGKGRRRWRVGEKIPMKQHCPHPDLLQVDPFEAIIDEEMLPGDILY
IPPGFPHEGYSIEDSLNYSVGFRAPNARELFSGFADYILANELGSYRYSDPELTFRDNSA
LIQENELTTLRSMMRELLEQPETFQNWFGEFISQSRHELDLAPPEPPYESDEIYDLLKQG
EELNRLSGLRVLRVGDQCFINGELMKTSHIHAADALCQHDKVNAALLGDSIDDVRFINLL
TALVNSGYWYFND
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggattatcagctaaatctggactggcaggcgtttttacaaaatcactggcaaaaacga
ccgttgctgattaaacaaggtttccgtcagtttattgatcccctatctcctgatgagttg
gcgggactggcgatggaaaatgaaattgatagtcgtctggtcagtcagaaaaacggtcgc
tgggaagtctcccacgggccgtttgaaacttacgatcacttaggtgcgaaagattggtca
ttactcgtacaagccgttgatcactggcatcttccttcctctgcacttatgagaccattt
cgtgtgttatctgattggcgcatggatgatttgatggtttctttctctgtgcccggtggt
ggtgtcggcccccatcttgatcaatatgatgtttttattattcaagggaaaggtcgtcga
cgctggcgtgtgggtgaaaaaataccgatgaaacaacattgcccacatcctgatttatta
caggttgatcctttcgaggcaatcattgatgaagaaatgctgccgggcgatatactttat
attccgccaggttttccacatgaaggctattctattgaggattcgctaaactattctgtt
ggttttcgtgcccccaatgcccgtgaattattcagtggatttgctgattacattctagca
aatgaattaggcagttatcgctacagcgatccagagctgacgttccgtgataattctgct
ctgattcaggaaaatgaattgacgacactgcgctcaatgatgcgtgaattgctggaacaa
ccggaaactttccaaaattggtttggtgaatttatctcccaatcgcgtcatgagttggat
cttgctccacctgaacccccttatgagagcgatgaaatttatgatctactgaaacaaggc
gaagaactcaatcgattgagtggattgcgtgtcttgcgggttggtgaccaatgcttcatc
aacggagagttgatgaaaacatctcacatccatgccgctgatgcactctgtcagcatgat
aaggttaatgccgcacttctgggggattctattgatgatgttcgctttatcaatctgctt
acggctttagtcaacagtggttattggtattttaacgattaa

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