Xenorhabdus nematophila AN6/1: XNC2_3087
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Entry
XNC2_3087 CDS
T03752
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03030
DNA replication
xnm03410
Base excision repair
xnm03420
Nucleotide excision repair
xnm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XNC2_3087 (ligA)
03410 Base excision repair
XNC2_3087 (ligA)
03420 Nucleotide excision repair
XNC2_3087 (ligA)
03430 Mismatch repair
XNC2_3087 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xnm03032
]
XNC2_3087 (ligA)
03400 DNA repair and recombination proteins [BR:
xnm03400
]
XNC2_3087 (ligA)
Enzymes [BR:
xnm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XNC2_3087 (ligA)
DNA replication proteins [BR:
xnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XNC2_3087 (ligA)
DNA repair and recombination proteins [BR:
xnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XNC2_3087 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XNC2_3087 (ligA)
MMR (mismatch excision repair)
DNA ligase
XNC2_3087 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XNC2_3087 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DZR_2
HHH
RNA_ligase
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CEK24081
LinkDB
All DBs
Position
I:complement(3152374..3154392)
Genome browser
AA seq
672 aa
AA seq
DB search
MKNIIEKINKLRITLRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPTQ
RIGATPLSAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSQDWVFCCELKLDGLA
VSLLYENGELVQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTG
FEKLNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHY
ARLMQFKEWGLPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERL
GFVAKAPRWATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHN
ADEIERLGLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERVEG
EAVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAG
KLTGLERMGPKSAQNVINALEKARKTTFARFIYSLGIREVGETTAANLVSHFGTLEKLQA
ADTEALIAVQDVGGIVASHVVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGEIDGPFA
GKTVVLTGSLNRLSRDEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPV
IDEDEMIRLLRE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattatcgaaaaaattaacaaattaagaataactttgcgtcatcatgaatat
ttatatcatgttatggatgcgccagagatcccggatgcagaatacgaccgtttgatgcgg
gaattaaaagcgttggaagagcagcatccagaatgggttaccgctgattctcccacgcaa
cgtatcggtgcaacaccgttaagtgctttcgagcaggtacgccatgaaattcctatgctg
tctttagataacgtatttgatgaagagagttatctggcatttgacaagcgtgttcgtgat
cgcctgaaagatagtcaagattgggtattttgttgtgaactgaaactcgatggtctggct
gttagcctgctctatgaaaatggggagttggtgcaggctgcaacgcgtggggatgggacg
acaggagagaatattaccgccaatgttcgtactattcacgctattcccttacgtttgaaa
ggggagaatattcctgcccgcgttgaaatccgcggggaagtattcataaaacagactgga
tttgaaaaactcaatgaagaagcgcgtcgcacaggaaataaagtctttgctaatccccgt
aatgcggcagccgggtcattgcgtcagcttgatccacgtattactgccaaacgtccgctc
actttttattgttatggcattggcgttcaggaaggcggagcattgccggcaagccactat
gcacgtctgatgcagttcaaagagtgggggttgcctgtcagtgacaaagtgaaattgtgt
ttgggtactcagcaagtgatcgatttttaccaggatattgaacagcagcgtccgacgctg
ggctttgatattgacggtgttgttgtcaaagtggattcgcttgaattacaggaaagactg
ggttttgttgccaaagccccacgttgggcgacagcattcaaatttcctgcgcaagaacaa
atgacggtcgtgcgcgatgtcgaattccaagtggggcgtacaggggcaattacgccggtt
gcgcgtttggaacccgtatcagtcgccggtgtgacagtcagtaatgccaccctgcataat
gcagatgaaattgaacgtttagggctgcgtattggtgatactgtcatcattcgtcgtgcc
ggagatgttatcccacaagtcgttggggttattcatgagcgcagaccagcggaaagtctg
gaagtcatttttcctcaacactgcccggtgtgtggctcagatattgaacgtgttgaagga
gaagccgttgcccgatgcacaggtggattgttctgtggcgctcagcgcaaagaagcatta
aggcattttgtttcccgacgggcaatggatgttgacggcatgggagaaaaaatcattgag
cagctcgttgataaagaatatgtcaaaactccagccgatcttttccgtctgactgcgggg
aaattaacaggtcttgagcgtatggggcctaaatcggcacaaaatgtcattaatgcgttg
gagaaagccaggaaaacgacttttgcccgttttatttattccttgggaattcgtgaagta
ggggaaacgacagcagccaatctggtttcacattttggtacattggaaaaacttcaggca
gcggatacagaagcattaattgcggtgcaagatgtaggcggtattgtggccagccatgtc
gtgaatttctttaatgaaccgcataatcaagctgttattgatgatttggtcaataatatt
ggtatccattgggaatcggctgaaagcccgaatttgggtgaaattgatggcccgtttgcc
ggtaaaacggttgtattgacaggttcattaaatcgtttatccagagatgaagccaaagat
aagttagcggccttaggtgcaaaagtgacaggaagtgtttccaagaaaaccgatctggtt
attgccggtgaagcagcgggttccaaactggctaaagccaatgagttgggtattcctgtt
attgatgaagatgagatgatccgtttattgagagaataa
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