Xenorhabdus nematophila AN6/1: XNC2_4358
Help
Entry
XNC2_4358 CDS
T03752
Symbol
ligB
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03030
DNA replication
xnm03410
Base excision repair
xnm03420
Nucleotide excision repair
xnm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XNC2_4358 (ligB)
03410 Base excision repair
XNC2_4358 (ligB)
03420 Nucleotide excision repair
XNC2_4358 (ligB)
03430 Mismatch repair
XNC2_4358 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xnm03032
]
XNC2_4358 (ligB)
03400 DNA repair and recombination proteins [BR:
xnm03400
]
XNC2_4358 (ligB)
Enzymes [BR:
xnm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XNC2_4358 (ligB)
DNA replication proteins [BR:
xnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XNC2_4358 (ligB)
DNA repair and recombination proteins [BR:
xnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XNC2_4358 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XNC2_4358 (ligB)
MMR (mismatch excision repair)
DNA ligase
XNC2_4358 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XNC2_4358 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
RNA_ligase
HHH
DUF6641
IMS_HHH
DUF7689
Motif
Other DBs
NCBI-ProteinID:
CEK25345
LinkDB
All DBs
Position
I:complement(4313495..4315228)
Genome browser
AA seq
577 aa
AA seq
DB search
MLNFLISFLITASVLLFGIPEAVADEGNCAAWMQAKWTQEKLQHETAHLKQQMAKWDHLY
RQQGISEIDDEIYDQLLETLRLWQRCSEQIPEGTFAVPVSQEGKQPHPVQHTGLHKLKEV
RGVRQWLQGRTKVWLQPKIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIPK
LIKHAPEHLVLQGELFWQQKSHRQFTVGSQGARSKVAGLMMRKTPEPEALRQIGIFIWSW
PDGPTDMVAKSEQLASMGFPLTQQYSHPITHIDDAEKRWTDYFVQPLPFATDGVVLRQEI
EPTGRQWRTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEKVRLDDRQVSR
VSIGSVKRWKQRNVYPGDKITVALAGHGIPKLDKVVWRMVERPVIQLPDEQHYHFLSCLS
LNHEGGTGVNDVNEHPCQQQFIARLTWLGEKLKMKGVGPGTWSLLVKHGMVTNLTDWLAL
DQVRLEKVPGIGSKRAELLFSQFRQAKSRPVSLWREAVGLPYANRFTDHIGWPWEVQLLD
KHIKGSLTAKQREKILAFLQHPEIKAAVDILDSQGIK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcttaattttctcatcagttttcttatcacagccagtgtattgctgtttggaattccc
gaggcggttgcggatgagggtaattgtgctgcatggatgcaggcaaagtggacacaggaa
aagcttcaacatgaaacagcccatctgaaacagcagatggcgaaatgggatcatctttat
cgccagcaggggatcagtgaaatagatgatgaaatctatgatcagttactggaaacctta
aggctgtggcaacgttgttcggagcagatacccgaaggcacttttgcggttcctgtctct
caggaaggaaaacaacctcatcctgttcagcatacgggtttacataagctaaaagaggtg
aggggagttcgtcagtggttgcagggaagaacaaaggtttggttacagcctaaaattgac
ggtgttgcggtgactttgatttatgaaaaagggcaattaatgcggcttatcagccgtggt
aatggcatagagggaacggactggatggataaaagcccgtttatttccagcatacccaaa
ttgataaaacatgcaccggaacatttggtattacaaggtgagcttttctggcagcaaaaa
agtcatcggcaatttactgtgggtagtcaaggtgcacgtagcaaagttgcaggattgatg
atgcgcaagacacctgagccggaggcgctcaggcaaatcggcatttttatctggagctgg
ccggatgggccaacggatatggtagctaagtcagaacagttggcttctatgggatttccc
ctcacacagcaatacagccatcccattactcatattgacgatgccgaaaagagatggacg
gattattttgttcagcctcttccttttgccacggacggtgttgttttgcgacaagaaatt
gaacctacaggccgacaatggcgcacaggatcaaatagttgggcgattgcatggaaatat
ccgttacgccaacaggtgacaacggtaaaagatgtcaatttcaccatcggccggacagga
agaatatccgtggtattaatgctggaaaaagtcaggttggatgatcggcaggtcagccgc
gtcagtatcggttctgtcaaacgttggaaacagcggaatgtttaccccggggataaaata
acggtggcactggccgggcatggtatacctaaactcgataaggttgtgtggcgcatggtt
gagcgccctgtaattcaattacctgatgagcagcattatcactttctcagttgcttatca
ctcaaccatgaaggcggtacaggtgtcaatgatgtgaatgagcatccttgtcagcagcag
tttattgcccgcctgacatggcttggcgaaaagttgaaaatgaaaggcgtagggccggga
acgtggtcacttttagtaaagcatgggatggtaacgaatttaacggattggctggccttg
gatcaggtaaggcttgagaaagtacccggtattggtagtaaacgggctgagttactcttt
tctcagttccggcaagcaaaatcacggccagtttcattatggcgtgaagctgttggcctg
ccatatgccaatcgttttaccgatcacataggttggccgtgggaagttcagttattggat
aagcatattaaaggttcattgacagcaaaacagagagaaaaaattttggcctttttgcag
catccggaaattaaagcggcagttgatatcttagattcacaagggattaagtaa
DBGET
integrated database retrieval system
