Xanthomonas oryzae pv. oryzae KACC 10331: XOO2410
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Entry
XOO2410 CDS
T00235
Symbol
lig1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03030
DNA replication
xoo03410
Base excision repair
xoo03420
Nucleotide excision repair
xoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XOO2410 (lig1)
03410 Base excision repair
XOO2410 (lig1)
03420 Nucleotide excision repair
XOO2410 (lig1)
03430 Mismatch repair
XOO2410 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xoo03032
]
XOO2410 (lig1)
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO2410 (lig1)
Enzymes [BR:
xoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XOO2410 (lig1)
DNA replication proteins [BR:
xoo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XOO2410 (lig1)
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XOO2410 (lig1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XOO2410 (lig1)
MMR (mismatch excision repair)
DNA ligase
XOO2410 (lig1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XOO2410 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AAW75664
UniProt:
Q5H057
LinkDB
All DBs
Position
complement(2570549..2573434)
Genome browser
AA seq
961 aa
AA seq
DB search
MRGTFFHVNRVGGSLDRTLRQLALGFTERLAEAQHLRFSAHAHIHALGPDRPAAADDDAL
LLHRIGEHACIALDVQQEAVDLRGQAGVALALEPGDGMSSYHFACRAIELKILSGQLVET
MEQGVIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS
MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGSSNPLEFSVEPKFDGL
AISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRD
GFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEE
IPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYK
LDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAG
VIVTNATLHNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQSWQMPTQCPV
CGSEIVREEGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQG
VADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLEATLVGIGVDLAGEREV
PQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTA
KALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLLARKVRIGD
THPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQS
VAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRD
AAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHGQQ
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
ttgcggggcaccttcttccatgtgaaccgggttggcggttcgcttgatcgaacgcttcgc
caattagcgcttggctttaccgaacgcctcgcggaagcgcagcatttgcgcttcagtgcc
cacgctcacatccacgcgcttgggccagatcggccagctgcggccgacgatgacgccttg
cttctgcatcgaatcggcgaacacgcctgcatcgcgcttgacgtccagcaggaagcagtt
gacctgcgagggcaggcaggtgtagcccttgcccttgagccaggcgatggtatgtcatca
taccacttcgcttgcagagcgatagaattgaagatcttgagtgggcaattggttgagacg
atggagcaaggtgtgattgagcgggcacgagagcttcggcggcgtatcgaaaatgctgac
caccggtattacgatcttgcagatcctgaaattacagatgctcagtacgaccagctcttt
agagagttacaggaactggagcagaagtatccagaactagtcacggctgactcaccgtcc
atgagggtgggtggagcagtgcggaaatcatttgtaaaagttagacactcaatccccatg
ctttctttggcgaatgcatttgatgaagttgaggtcaaaaacttcgttgatcgaattttt
cgtcgaatgggcagctcgaacccgctcgaattttctgtagagccaaaatttgatggtcta
gcaattagcttgcgttacgaactaggcaagttcgttcaaggtgtgacccgtggtgacggc
gatgttggcgaggatgttagtgagaacattcggacaataaggtcagttccattgaaatta
aagggcaacaacgttccggctatcttagaggttcggggtgaagtctatatgccacgtgat
gggttttctgaattcaataagcgtgctatggctcggggcgaaaaacttctcgccaatccg
aggaatggggccgcgggctctttgcgtcagctagatagtcgtatctcggctcagcgtccg
ctttctttttttgcatatggggtagggctcattcaagtagagcaggacctctttgaggag
attccgcaaagtattgcgtcaactcattcagcaatgctggcgcagctgcgcgcgtgggga
tttccagtgagttcgctagtcgaagtggtgcagggcagcgacggtctgctggcgtattac
cagcgcatcggtgaggcgcgcgacggcttgcccttcgatatcgatggcgtggtctacaag
ctcgacgatctggccgggcaacgcgagatgggcttcgtctcgcgtgcgccgcgttgggcg
cttgcgcacaagttcccggcgcaggaacagtccaccaccgtcgaagccatcgagatccag
atcggacgtaccggtgcggccacgccggtggcgcgtttgaagccggtgcatgtggccggg
gtgatcgtcaccaatgccacgctgcacaacgccgaccagatcgcgcggctggatgtgcgc
gtgggcgatacggtgatcgtgcgccgcgccggcgatgtgattcctgaagtggccgccgtg
gtagccgaccaacgccctcccgcaacgcagtcgtggcagatgcccacgcaatgcccggtc
tgcggttcggagatcgtgcgcgaagaaggtcaggcggtgtggcgctgctccggcgagttg
acctgcccggcgcagcgcaaggaagccttccggcatttcgtctcgcggcgcgcgatggat
gtggatggtctgggcgaaaaattcatcgaggtgttggtcgacagcggcgtggtgcaaggt
gtggccgatctgtatctgctcacggtggatcagctgctgcaactgcgcatgatcagcacg
gccgaaagtccgcatgcgttcttgcgcgaggcgcgcgagcatctggccagcggcgcgtat
gcacagctggaagccaccttggtcggtatcggcgtggacctggccggcgagcgcgaggtg
ccgcaaacctggcaggccgatctactgcgcgcaggcctgccgacgttcgactggaatcgc
aagaagatcgccaccaagtgggcagagaatctgatcgaggcgattgaaacatcgcgcgac
accacgctggagcgttttctgtttgcgctgggcatcgaacacgtaggcgaaagcacggcg
aaggcgttgtcggcgtggtttggcgatctggacttgattcgtcatctgccctggccgctg
ttcaagcgcgtgccggatatcggtggagaagtggcgcgttcgctggggcatttcttcgat
cagcccgggaatcagaaggccatcgatcatctgctggcgcgcaaggtgcgcatcggcgac
acccatccgccttcgccgaagctgcgtggcgagctgcgcttggccaatttgctggaggac
ctggagattcccaaggtgacgccgattcgcgccgcccagatcgcgactgcgtttggttcc
atcgatgccctgcgcaatggcggtcccgagcctctcgtcgaagcgggtgtaccgcagtca
gtggccgagtcgctcgcgacttggctgttggtgccggccaacgacacgctcgcggttaaa
gcccagaaaaagctttccgcgctgctggctatgatgccggaggctggcgaagaaaagact
ggcccgctcgatggacagaccgtggtcatcaccgggaccttggctgcgctgacgcgcgat
gcggccaagcagcggctggaagcattgggcgccaaggtcgccggtagcgtctccaagaag
acggcgtttctggtggccggcgaagaagccggttccaagctcgacaaggcgcaatcgctg
ggcgtggagatctgggacgaagcgcgtctgctggccttcctgggcgaacacggccaacag
cgatga
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integrated database retrieval system
