KEGG   Xanthomonas perforans: BJD13_08455
Entry
BJD13_08455       CDS       T04778                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xpe  Xanthomonas perforans
Pathway
xpe03030  DNA replication
xpe03410  Base excision repair
xpe03420  Nucleotide excision repair
xpe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJD13_08455
   03410 Base excision repair
    BJD13_08455
   03420 Nucleotide excision repair
    BJD13_08455
   03430 Mismatch repair
    BJD13_08455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xpe03032]
    BJD13_08455
   03400 DNA repair and recombination proteins [BR:xpe03400]
    BJD13_08455
Enzymes [BR:xpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BJD13_08455
DNA replication proteins [BR:xpe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJD13_08455
DNA repair and recombination proteins [BR:xpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BJD13_08455
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJD13_08455
   MMR (mismatch excision repair)
    DNA ligase
     BJD13_08455
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BJD13_08455
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: APO99100
LinkDB
Position
complement(1559367..1561868)
AA seq 833 aa
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVQAIPLRLRGEGWPQVLEVRGEVYMPR
AAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQTWQADL
LRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHPPSPKL
REALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQW
LDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgcatcgaagac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgccgattacgacaag
ttgatgcgcgagctggaggccttggagcgcgcgcacccggaattggccagtgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcgatttgccgaagtgcggcatgccttg
ccgatgctgtcgttgggcaatgccttcagcgatgaggaagtgaccgagttcgtgcgccgc
atcagcgagcggctggaggtcaagcaaccgctgttttccgccgaacccaagctcgatggc
ctggcgatcagcctgcgctacgagaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtccaggcgattccattgcgg
ctgcgcggcgagggctggccgcaggtgctggaagtgcgcggcgaggtctatatgccgcgc
gccgcgttcgaagcctacaacgcacagatgcgtgcgcagggcggcaaggtgctggccaac
ccgcgcaatggcgcggccggctcgctgcgccagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttctttgcctacggcgtcggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcaactgcgtgcgtggggctttccggtcagcgcgctggtcgag
gtggtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgccgcacgcgat
gggctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgattgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaatgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggggacgtcattcctgaagtggccgctgtggtggccgaccagcgcccgcccggt
acccaggcctggcagatgccgacgcaatgcccggtgtgcggttcgcagatcgtgcgcgaa
gaaggtcaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgttccggcattttgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaaaggcgtggccgacctgtatctgctaagc
gtggatcagctgctgcaattgcgcctgatcagcacggccgagagtccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggcgcatatgcgcagctggaaaccagcgtggtc
ggcatcggcgtggacctggccggcgagcgcgacgtgccgcagacctggcaggccgatctg
ctgcgcgcaggcttgccgcgcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaacatcgcgcgacaccacgctggagcgtttcctgttt
gcgctgggtatcgagcatgtgggcgaaagcacggccaaggcgttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggacatcggc
ggcgaagtggcgcgttcgcttgggcacttcttcgatcaggccggcaatcagcaggccatc
gatgacctgctgcagcgtggcgtgcgcatcggcgatacgcatccaccttcgcccaagctg
cgcgaggcgttgagttttgccagcgtgctggaagacatggacattcccaaggtgacgccg
gtgcgcgcgcagcagcttgccgcggcggtggattcgttcgctgcgttgcgcacggccggt
gccgatgccttgcagcaagctggcgttccggcacccgtggtggccgcgttgctgcaatgg
ctggatcgccccgaaaacactgcgctcgcgaatgcggcgcagcaggcgatggaaaccgtg
ctggcgcgtctgccccaagccgatgcgctgcagaccggcccgctcgatggccagaccgtg
gtcatcaccgggaccctggctgcgctgacacgcgatgcggccaaacagcggctcgaagca
ttgggcgccaaggtcgccggtagcgtctccaagaagacggcatttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cgtctgctggccttcctgggcgaccacggccaacagccgtga

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