Xenorhabdus poinarii: XPG1_1152
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Entry
XPG1_1152 CDS
T03805
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xpo
Xenorhabdus poinarii
Pathway
xpo03030
DNA replication
xpo03410
Base excision repair
xpo03420
Nucleotide excision repair
xpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XPG1_1152 (ligA)
03410 Base excision repair
XPG1_1152 (ligA)
03420 Nucleotide excision repair
XPG1_1152 (ligA)
03430 Mismatch repair
XPG1_1152 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xpo03032
]
XPG1_1152 (ligA)
03400 DNA repair and recombination proteins [BR:
xpo03400
]
XPG1_1152 (ligA)
Enzymes [BR:
xpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XPG1_1152 (ligA)
DNA replication proteins [BR:
xpo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XPG1_1152 (ligA)
DNA repair and recombination proteins [BR:
xpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XPG1_1152 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPG1_1152 (ligA)
MMR (mismatch excision repair)
DNA ligase
XPG1_1152 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XPG1_1152 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
DZR_2
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
CDG20807
UniProt:
A0A068R0L3
LinkDB
All DBs
Position
1114039..1116057
Genome browser
AA seq
672 aa
AA seq
DB search
MENITQKINELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELKLLEEQYPALVTADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSQDLVFCCELKLDGLA
VSLLYEHGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGDNIPARVEIRGEVFMKQHG
FEKLNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGILEGGVLPASHY
ERLMQFKRWGLPVSDKVKLCQGTQQVMAFYHDIEQQRSTLGFDIDGVVVKVDSLEWQEKL
GFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIARLGLRIGDTVIIRRAGDVIPQVVGVVHDQRPADTQNVIFPEHCPVCGSEIERVEG
EAVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAG
KLTGLERMGPKSAQNIINALEKAKKTTFARFIYALGIREVGEATAANLVAHFGTLETLRT
ADMAALIAVPDVGSVVASHVMNFFSEPHNQVVIDDLVNNMGIHWASTESQPLEEVDSPFA
GKTVVLTGSLSRLSRDEAKDKLNALGAKVTGSVSKKTDFIIAGEAAGSKLAKANELGIPV
IDEEEMLRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattactcaaaaaatcaatgaattaagaacaacattacgtcatcatgaatat
ttgtatcatgttatggatgcgccagagatcccggatgccgaatatgatcgtttgatgcgg
gaattaaaattactggaagaacaatatccagcgctggttaccgctgattcgcctacccaa
cgcgtcggcgccgcaccattgactgcatttgagcaggtgcgccatgagatcccgatgctc
tctctggataatgtctttgatgaagagagttacctcgcatttgataagcgtgttcgtgat
cgtttaaaagacagccaggatctggtgttttgttgtgaactgaaactggatggtctggca
gtgagcttgctgtatgaacatggggaattggtacaggccgcgacacgcggagatgggaca
accggcgaaaatattaccgtcaatgtgcgtaccattcacgccattcctctgcgtctgaaa
ggggataatattccagcgcgtgtggaaattcgtggcgaagttttcatgaagcaacatggg
tttgaaaaactcaatgaagaagcccgccgcacaggaaataaagttttcgcaaatccccgc
aatgcagcggcgggttcattgcgtcaacttgatcctcgcattacagccaaacgcccactc
accttctattgttatggtgtcggtattttggaaggcggcgtattacctgcaagtcattat
gaacgtctgatgcaattcaagcgttggggactgcctgtcagtgacaaagtgaagctatgt
cagggaactcaacaggtgatggctttttatcacgacattgagcagcaacgctcgacattg
ggctttgatattgacggtgttgtcgtcaaagttgattcgctcgaatggcaagaaaaatta
ggctttgttgccagagcaccacggtgggcgacggcgttcaaatttccggctcaagaacag
atgaccattgtccgcgatgttgaatttcaggtgggacgtaccggcgcgattacgcccgtt
gcccgtttagaacccgttttggtcgcaggtgttacagtcagtaatgcgacattacacaat
gcagatgaaattgcacgtttggggttacgcattggtgatacggtgattattcgccgcgcc
ggtgatgtgattccacaggtcgtgggtgtggttcatgaccagaggccagccgacactcag
aacgtgatttttcctgagcactgtccggtttgtggttcagaaatagaacgtgttgaggga
gaagcggttgctcgttgtactggcggcttgttctgcggcgcgcagcgtaaagaagcgctg
aaacattttgtttcccgccgtgccatggatgttgatgggatgggcgaaaaaatcattgaa
cagcttgtggataaagaatatgtcaaaacaccggcggatctttttcgtcttaccgcagga
aaactgactggccttgagcgaatggggcctaaatcggcacaaaatatcattaatgcctta
gaaaaggcgaaaaaaacaacatttgcccgctttatttacgcgttaggcattcgtgaagtt
ggtgaagcaactgctgcgaatctggttgcccattttgggacattggaaacattacgtacc
gcagatatggcggcattgattgcagtgccagatgtgggcagtgtggttgccagtcatgtc
atgaatttctttagtgagccgcataatcaggtcgtgattgatgatttggtcaataatatg
ggtattcattgggcgtcgactgaaagccagccgttggaggaagtagacagcccattcgcg
ggcaaaaccgtggtattaacgggatcattgagccgtttatctcgcgatgaagcaaaagat
aagttaaacgctttaggggcaaaagtgacaggaagtgtgtctaaaaaaacagatttcatt
atcgctggcgaagcagccggatctaaactcgctaaggctaatgaattgggcattcctgtg
attgatgaggaagaaatgcttcgtttgttgggtgaataa
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