Xanthomonas sacchari: SB85_03230
Help
Entry
SB85_03230 CDS
T03566
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03030
DNA replication
xsa03410
Base excision repair
xsa03420
Nucleotide excision repair
xsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SB85_03230
03410 Base excision repair
SB85_03230
03420 Nucleotide excision repair
SB85_03230
03430 Mismatch repair
SB85_03230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xsa03032
]
SB85_03230
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_03230
Enzymes [BR:
xsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SB85_03230
DNA replication proteins [BR:
xsa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SB85_03230
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SB85_03230
NER (nucleotide excision repair)
GGR (global genome repair) factors
SB85_03230
MMR (mismatch excision repair)
DNA ligase
SB85_03230
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SB85_03230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AJC44919
LinkDB
All DBs
Position
complement(798167..800683)
Genome browser
AA seq
838 aa
AA seq
DB search
MTAIPDPQQRAAELRQRIDDANHRYYVLDDASIPDAEYDALMRELEALEAAHPELASADS
PTRKVGARPDGGFPEVRHAIPMLSLANAFETPGVAEDADDRTRFAEVADFERRIERELEL
AAPVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLKLRDLGVP
PPAVLEVRGEIYMPRAAFAAWNAQALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFF
AYSVGEVRGLELPETHSQTLQLLRDYGFPVAPEADTATGFDGLIAYFRRIGAARDSLPYD
IDGVVYKLDDYDQQQAMGFVSRAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAVTPVARL
EPVQVAGVTVTNATLHNADQIARLDVREGDTVIVRRAGDVIPEVVRVIEERRPPGTAPWT
MPATCPVCGSELVKEEDAVAWRCSGGLACAAQRKEAVRHFASRRAMDIEGLGERQADALV
EFGFVQSLADLYALSVEDLVRMKAALDAATAADLLQALEDSKGALALDAAGRAALEDEAA
QWRHADFLRAHLTVDLGGKLATKWAENLVAGIDASRDTTLPRFLFALGIPHLGETTAKAL
AYWLGSLTFVRSTPAVLLQALPDIGGEVARSIATFFEQPGNAAVVDALITAGIRFSDEGA
PPAELRERLDLAHLLGTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSTAGAA
NLAAYLADPAQKQALLDAEAAMQRLLDAAPAQTRRRAGPLDGQTVVLTGTLTALTRDEAK
ARLEALGAKVAGSVSKKTAFVVAGEAAGSKLDKAQELGVAVWDEAQLLAFLQAQGKGA
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaattcccgatccccagcagcgtgccgccgagttgcgtcagcgcatcgacgac
gccaaccatcgctactacgtgctcgacgacgcgtcgattcccgatgccgagtacgacgcg
ctgatgcgcgagttggaggccctggaagccgcgcacccggagctggccagcgcggattcg
ccgacgcgcaaggtcggtgcacgcccggacggcggctttcccgaagtgcgccacgcgatc
ccgatgctgtccctcgccaatgccttcgaaacccccggcgtggccgaggacgccgacgac
cgcacacgcttcgccgaggtcgccgatttcgagcgccgcatcgagcgcgaactcgaactg
gccgcgccggtgttctcggtggagccgaagctcgatggcctggcgatcagcctgcgctac
gaggacggcgtgttcgtgcagggcgccacccgcggcgacggcagcaccggcgaggacgtc
accgccaacctgcgccaggtgcgttcggtgccgctgaagctgcgcgacctcggtgtgccg
ccgccggcggtgctggaagtgcgcggcgagatctacatgccgcgcgccgccttcgccgcg
tggaacgcgcaggcgctggagcgcaacgaaaagctgctggccaacccgcgcaatggcgcc
gccggctcgctgcgccagctcgatccggcggtcacccggcgccggcctctggcgttcttc
gcctactcggtgggcgaggtgcgcggcctggaactgcccgaaacccattcgcagacgctg
cagctgctacgcgactacggcttccccgtcgccccggaggcggataccgccaccggcttc
gatggcctgatcgcgtatttccgccgcatcggcgccgcccgcgacagcttgccgtacgac
atcgatggcgtggtctacaagctcgacgactacgaccagcaacaggcgatgggcttcgtc
tcgcgcgcgccgcgctgggcgctggcgcacaagttcccggcgcaggaacaatccaccgtg
ctgcgcgcgatcgaggtgcagatcggccgcaccggcgcggtcaccccggtggcgcggctg
gagccggtgcaggtcgctggcgtcacggttaccaacgcgacgttgcacaacgccgaccag
atcgcgcggctggacgtgcgcgaaggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atcccggaagtggtgcgggtgatcgaggaacggcgtccgccgggcaccgcgccgtggacg
atgccggcgacctgcccggtgtgtggctccgagctggtcaaggaagaggacgcggtggcc
tggcgctgcagtggcggcctggcctgtgcggcgcagcgcaaggaggccgtgcggcacttc
gcctcgcgtcgtgccatggacatcgaaggcctgggcgagcgccaggccgatgccctggtc
gagttcggcttcgtgcagtcgctggccgacctgtacgccttgagcgtggaggacctggta
cggatgaaggccgcgctggacgcggccaccgccgccgacctgctgcaggcgctggaggac
agcaagggcgcgctggcgctggacgcggccggccgcgccgcgttggaagacgaggccgcc
cagtggcggcacgccgacttcctgcgcgcgcacctgacagtggacctggggggcaagctc
gcgaccaagtgggccgagaacctggtcgccggcatcgacgccagccgcgacaccacgctg
ccgcgtttcctgttcgcgctgggcattccgcacctgggcgagaccacggccaaggcgctg
gcctactggctgggctcgctgacgttcgtgcgcagcaccccggcggtgctgctgcaggcc
ttgccggacatcggcggcgaggtggcgcgctcgatcgccacgttcttcgagcaacccggc
aacgccgcggtggtcgatgcgttgatcaccgccggcattcgcttttccgacgagggcgca
ccgccggcggaattgcgcgagcgcctggatctggcgcatctgctgggcacgctgccggtg
gacaagctcggcggcaagagcgcgcagcgcctggccgccacctacggcacgttggacgcc
ttgctgcgcgccaacgaaagcggctggaccggggcggggctgtccacggccggcgccgcc
aacctcgccgcgtacctggccgatccggcgcagaagcaggcgctcctggatgccgaggcg
gcgatgcaacgcctgctcgatgccgccccggcgcagacccggcgccgcgccggcccgctg
gacgggcagaccgtggtgctgaccggcacgctgaccgcgttgactcgcgacgaggccaag
gcacgcctggaggcgctgggcgccaaggtggccggcagtgtgtcgaagaagaccgcgttc
gtggtcgccggcgaggccgccggttccaagctcgacaaggcgcaggagctgggcgtggcg
gtgtgggacgaggcgcagttgctggcgttcctgcaggcgcaggggaagggcgcatga
DBGET
integrated database retrieval system
