Xenorhabdus stockiae: AB0856_001251
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Entry
AB0856_001251 CDS
T11396
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03030
DNA replication
xsk03410
Base excision repair
xsk03420
Nucleotide excision repair
xsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB0856_001251 (ligA)
03410 Base excision repair
AB0856_001251 (ligA)
03420 Nucleotide excision repair
AB0856_001251 (ligA)
03430 Mismatch repair
AB0856_001251 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xsk03032
]
AB0856_001251 (ligA)
03400 DNA repair and recombination proteins [BR:
xsk03400
]
AB0856_001251 (ligA)
Enzymes [BR:
xsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB0856_001251 (ligA)
DNA replication proteins [BR:
xsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB0856_001251 (ligA)
DNA repair and recombination proteins [BR:
xsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB0856_001251 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB0856_001251 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB0856_001251 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB0856_001251 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
DZR_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
YAP80065
LinkDB
All DBs
Position
1375893..1377926
Genome browser
AA seq
677 aa
AA seq
DB search
MKNIIQKINELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELKSLEEQHPELITADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDQESYLAFDKRVRDRLKDSRELVFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARVEIRGEVFMKQAG
FEKLNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVIEGGDSENGQL
PASHYGRLMQFRQWGLPVSDKVKLCQGTQQVLDFYREIEQQRPELGFDIDGVVIKVDSLE
LQEALGFVARAPRWATAFKFPAQEQITIVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN
ATLHNADEIERLGLRIGDTVVIRRAGDVIPQVVGVIQEKRPTESQEVVFPEHCPVCGSDI
ERVEGEAVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLF
RLTAGKLTGLERMGPKSAQNVVNALEKSKKTTFARFIYSLGIREVGEATAANLVVHFGTL
EKLSIADTQALIAVQDVGEVVASHVVNFFNEPHNQAVIDDLVNNIGIHWESAEVPQVADI
DSPFAGKTVVLTGSLSRLSRDEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKATE
LGIAVIDEEEMLRLLGE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattattcaaaaaattaacgaactaagaacaacattgcgtcatcatgagtat
ttataccatgttatggatgcaccagagatcccggatgcggaatatgatcgcttaatgcgg
gaactaaaatcactggaagaacagcacccggaactgattactgcggattcacctacccag
cgggtcggagcagcgccattaactgcatttgagcaggtgcgtcatgaaatcccgatgtta
tctttggataatgtttttgatcaagaaagctatctagcgtttgataaacgtgttcgtgat
cggctgaaagacagtcgtgaactggtattttgctgtgaactcaaacttgatggtctggct
gttagcctgctgtatgaaaatggcgagttagtgcgggcggctacccgtggcgatggtact
acaggagaaaatataaccgctaatgttcgtacgatccgcgcaattcccctgcgtttgaaa
ggagacaatattccagcccgtgtagagatccggggtgaagtctttatgaagcaggctggt
tttgaaaaacttaacgaagaagcccgtcggacaggtaataaagtatttgccaatcctcgc
aatgcagcagccggatcgttgcgccaacttgatccgcgcattacagctaaacgtccactg
actttttattgttatggtgttggcgttattgaaggcggagattcagaaaacgggcagctg
ccagcaagccattacgggcgcctgatgcaattcaggcagtgggggcttccggtcagtgac
aaagtgaaattatgtcagggaacccagcaggtattggatttttaccgtgagatagagcaa
cagcgccctgagctgggttttgatattgacggtgttgttatcaaagttgactcccttgaa
ctgcaggaagcactaggattcgtagccagagcacctcgctgggcgacggcattcaagttt
ccggcacaagaacaaataaccatcgtgcgggatgtcgaatttcaggtagggcgtacgggc
gctattacgccggttgcacgtctggagccggtacaggttgcaggtgtaatcgtcagtaat
gccactttgcataatgcagatgaaattgagcgtctggggctgcgcataggtgatactgta
gttatccgtcgtgcgggtgacgttattccacaggttgttggtgtcattcaggaaaaaaga
ccaacagagagccaggaagttgttttcccggagcattgccctgtttgtggctctgatatt
gaacgtgttgaaggggaagcggtagcacgttgtaccggtgggttattctgtggtgcacag
cgtaaagaagcattaaggcatttcgtttcccgccgtgcaatggatgtggatggaatggga
gaaaaaattattgagcagctggttgataaggaatatgtcaaaactccggctgatcttttc
cgtcttaccgcagggaaattaacgggtcttgagcgtatggggccaaaatccgctcagaac
gtggtgaatgcgctggaaaaatccaagaaaacaacctttgcccgttttatttattcactg
ggaattcgtgaggtcggagaggcgacagctgctaatttagttgttcattttggtacactg
gagaaattgagcatagcagatacgcaagctctgattgctgttcaggacgtgggagaagtt
gttgccagtcatgtggttaatttctttaatgaaccacataatcaggcagtcattgatgat
ctcgtcaataatattggtatccactgggaatctgcagaagtaccacaagtcgcagatatt
gatagcccatttgcaggtaagactgtggtgttgaccggatcactaagtcgtttatcccgg
gatgaggctaaagacaaactggctgctctgggagctaaagttacaggcagtgtttccaaa
aaaaccgatctggtgattgctggtgaagcagccggttccaaattagcgaaagctacagag
ttaggaatagctgtcattgatgaagaagaaatgcttcgtcttttaggtgagtaa
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