Xanthomonas sontii: RAB70_12670
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Entry
RAB70_12670 CDS
T10538
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xso Xanthomonas sontii
Pathway
xso03030
DNA replication
xso03410
Base excision repair
xso03420
Nucleotide excision repair
xso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAB70_12670 (ligA)
03410 Base excision repair
RAB70_12670 (ligA)
03420 Nucleotide excision repair
RAB70_12670 (ligA)
03430 Mismatch repair
RAB70_12670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xso03032
]
RAB70_12670 (ligA)
03400 DNA repair and recombination proteins [BR:
xso03400
]
RAB70_12670 (ligA)
Enzymes [BR:
xso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RAB70_12670 (ligA)
DNA replication proteins [BR:
xso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RAB70_12670 (ligA)
DNA repair and recombination proteins [BR:
xso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RAB70_12670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAB70_12670 (ligA)
MMR (mismatch excision repair)
DNA ligase
RAB70_12670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAB70_12670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
XCI83124
LinkDB
All DBs
Position
3001184..3003700
Genome browser
AA seq
838 aa
AA seq
DB search
MTAIPDPQQRAAELRQRIDDANHRYYVLDDASIPDAEYDALMRELEALEAAHPELASADS
PTRKVGARPDGGFPEVRHAIPMLSLANAFETPGVAEDADDRTRFAEVADFERRIERELEL
AAPVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLKLRDLGVP
PPAVLEVRGEIYMPRAAFATWNAQALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFF
AYSVGEVRGLELPETHSQTLQLLRDYGFPVAPEADTATGFDGLIAYFRRIGAARDSLPYD
IDGVVYKLDDYDQQQAMGFVSRAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAVTPVARL
EPVQVAGVTVTNATLHNADQIARLDVREGDTVIVRRAGDVIPEVVRVIEERRPPGTAPWT
MPTACPVCGSELVKEEDAVAWRCSGGLACAAQRKEAVRHFASRRAMDIEGLGERQADALV
EFGFVQSLADLYALSVEDLVRMKAALDAATAADLLQAVEDSKGALALDAAGRAALEDEAA
QWRHADFLRAHLTVDLGGKLATKWAENLVAGIDASRATTLPRFLFALGIPHLGETTAKAL
AYWLGSLAFVRSTPAVLLQALPDIGGEVARSIATFFEQRGNVAVVDGLINAGIGFSDEGA
PPAELRERLDLAHLLGTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSTAGAA
NLAAYLADRAQKQALLDAEAAMQRLLDAAPAQTQRRAGPLDGQTVVLTGTLTALTRDEAK
AQLEALGAKVAGSVSKKTAFVVAGEAAGSKLDKAQELGVAVWDEAQLLAFLQSQGQGT
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaattcccgatccccagcagcgtgccgccgagttgcgccagcgcatcgacgac
gccaatcaccgctactacgtgctcgacgacgcgtcgattcccgatgccgagtacgacgcg
ctgatgcgcgagttggaggccctggaagccgcgcacccggagctggccagcgcggattcg
ccgacgcgcaaggtcggtgcgcgcccggacggcggctttcccgaagtgcgccacgcgatc
ccgatgctctcgctcgccaatgccttcgaaactccgggcgtggccgaggacgccgacgac
cgcacgcgcttcgccgaggtcgccgatttcgagcgccgcatcgagcgcgaactcgaactg
gccgcgccggtgttctcggtggaaccgaagctcgatggcctggcgatcagcctgcgctac
gaggatggcgtgttcgtgcagggcgccacccgcggcgacggcagcaccggcgaggacgtc
accgccaacctgcgccaagtgcgttcggtgccgctgaagctgcgcgacctcggcgtgccg
ccgccggcggtgctggaagtgcgcggcgagatctacatgccgcgcgccgccttcgctacc
tggaacgcacaggcgctggagcgcaacgagaagctgctggccaacccgcgcaatggcgcc
gccggctcgctgcgccagctcgatccggcggtcacccggcgccggccgctggcgttcttc
gcctattcggtgggcgaggtccgtggcctggagctgcccgaaacccattcgcagacgctg
caactgctgcgcgactacggcttccccgtcgccccggaggcggataccgctaccggcttc
gatggcctgatcgcgtatttccgtcgcatcggcgccgctcgcgacagcctgccttacgac
atcgacggcgtggtctacaagctcgacgattacgaccagcaacaggcgatgggcttcgtc
tcgcgcgcgccgcgctgggcgctggcgcacaagttcccggcgcaggaacaatccaccgtg
ctgcgcgcgatcgaggtgcagatcggccgcaccggcgcggtcaccccggtggcgcggctg
gagccggtgcaggtcgctggcgtcacggttaccaacgcgacgttgcacaacgccgaccag
atcgcgcggctggacgtgcgcgaaggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atcccggaagtggtgcgggtgatcgaggaacggcgtccgccgggcaccgcgccgtggacg
atgccgacggcgtgcccggtgtgcggttcggaactggtcaaggaagaggacgcggtggcc
tggcgctgcagcggcggcctggcctgtgcggcgcagcgcaaggaggccgtgcgtcacttc
gcctcgcgccgcgccatggacatcgaaggcctgggcgagcgccaggccgatgccctggtc
gagttcggcttcgtgcagtcgctggccgacctgtacgccttgagcgtggaggacctggta
cggatgaaggctgcgctggacgcggccactgccgccgacctgctgcaggcggtggaggac
agcaagggcgcgctggcgctggacgcggccggccgcgccgcgttggaagacgaggccgcc
cagtggcggcacgccgacttcctgcgcgcgcatctcacggtggacctggggggcaagctc
gcgaccaagtgggccgagaatctggtcgccggcatcgacgccagccgcgccaccacgctg
ccgcgtttcctgttcgcgctgggcattccgcacctgggcgagaccacggccaaggcgctg
gcctactggctgggctcgctggcgttcgtgcgcagcaccccggcggtgctgctgcaggcc
ttgccggacatcggcggcgaggtggcgcgctcgatcgcgaccttcttcgagcagcgcggc
aacgttgcggtggtcgatggcctgatcaatgccggcatcggcttctccgacgagggcgca
ccgccggccgaattgcgcgagcgcctggatctggcgcatctgctgggcacgctgccggtg
gacaagctcggcgggaagagcgcgcagcgcctggccgccacctacggcacgttggacgcc
ttgctgcgcgccaacgaaagtggctggaccggggcggggctgtccacggccggcgccgcc
aacctggctgcttacctggctgatcgggcacagaagcaggcgctgttggacgccgaggcg
gcgatgcaacgtctgctcgatgccgcgcctgcgcagacgcagcgtcgcgccggcccgctg
gatgggcagaccgtggtgctgaccggcaccctgaccgcgctgacccgcgacgaggccaag
gcgcaactggaggcgctgggcgccaaggtcgccggcagcgtgtcgaagaagaccgcgttc
gtggtcgccggcgaggctgccggttccaagctcgacaaggcgcaggagctgggcgtggcg
gtgtgggacgaggcgcagttgctggcgttcctgcagtcgcaggggcagggcacatga
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