Xenopus tropicalis (tropical clawed frog): 100127191
Help
Entry
100127191 CDS
T01011
Symbol
rnf123
Name
(RefSeq) E3 ubiquitin-protein ligase RNF123 isoform X1
KO
K12169
Kip1 ubiquitination-promoting complex protein 1 [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100127191 (rnf123)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100127191 (rnf123)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100127191 (rnf123)
Multi subunit type E3
KPC complex
100127191 (rnf123)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_RNF123
SPRY
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
100127191
NCBI-ProteinID:
XP_002936521
Xenbase:
XB-GENE-923134
UniProt:
A0A8J0QP78
LinkDB
All DBs
Position
4:125959224..126010415
Genome browser
AA seq
1306 aa
AA seq
DB search
MASRGSGTSLTRKNYRLTSESEKRKVPGIVNERLLNLYLQRIFPATEGTSHGAAYRKPLT
FQNLEEHLERLVSAGETTEDDTDQAAEGRLGPSTVVLDHTSGFEGLLLVDDDLLGVIGHS
NFSSIRATTCVYKGKWLYEVLISSQGLMQIGWCTLSCRFNQEEGVGDTPDSYAYDGNRVR
KWNVTTTNYGKSWAAGDIVSCLIDLDEGTISFCLNGVSLGTAFSDISRGSGMAYFPAISL
SFKESVAFNFGSRPLRYPVEGYRPLQDPPTADLLKSQRLMGYLKNTLRTGIDVQEGKLVD
KDPATWQLQGEPTILITLAHIFNQFAPLMCKVYLVEDVLINFLLGILEKGGAVEEHPLIQ
HLLDLMWLLMEDYEIHECLKQLMMSLLRAYRFSPIVPDLGLQIHYLRLTIAILRHEKSRK
YLLSNVLFDVLRSVVFFFIKCPLRVEEAGLQELIPTTWWPNRFNKEGKEIRDPSEESGEE
RLRRRAYERGCMRLKKRIEVVEELQVQILRLLLNNKDKGGGEASRYIFLNKFRKFLQENA
SNRGNPTVLCPPEYMVCFLHRLISALRSCWDEYKIRNPLACGSDEAYVPPQLFYNGKVDY
FDLQRLGGLLSHLRKTLKDELAAKANIVIDPSELQAVTMDDLEEEDESANTTAQRSSAAL
AIGGALARPSWLSSPTLGRANRFLSTAAVSLMNPRRPLGALDKVKVRSLSVDQRTEDDIE
GQHGNDGLLLGRPPEEADTVITENSLLEILDGAVMMYNLSVHQQLGKMVGVSDDVNEYAL
ALKDTEEKIKRCPKRRADIMDELVKSQRVFSEKLNHLSRRLAWINVTIYSKDKMQDIYWL
LQVCLRSIEHADRTGSLFAFMPEFYLNVAMNSYNALKNYFSPVSSMEELQGYEETLTRLA
TILAKHFADPRIVGTDIKDSLMQALASYVCYPHSLRAVERISEEQQISMMKNLLAPYEQR
PWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQNHMAELLRG
DPELASSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSL
LRVLEMTVTLVPDIFLDWSRSSSELLLRRLAQLLNQVLNRVTAERNLFDRVVNLRLPGLE
SVDHYPILVAVTGILVRLLVDSSSQGIQRATAVLLADPCFQLRSIQYLLGQAEQSVLGAG
PPSADKKHFSLQAYTDYINAEELGKVSNMLAHLSEESKQAAAATQPTSEEDLCPICYAHP
ISAVFKPCSHKSCKACINQHLMNNKDCFFCKATITGVDDYEKPTAN
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaggggatctggcacgtcactaacaagaaaaaactacaggttgacatctgaa
tctgagaaaagaaaggtcccgggtattgtgaatgagagactactaaatctatatctgcaa
cggatattccctgccacagaagggacgtcgcatggtgctgcatacagaaaacctctcact
ttccagaacttagaggagcatttggaaagactagtgtctgctggagagaccacagaagac
gatactgatcaggctgcagagggacgtttggggccttccacagtcgtactagaccatacc
agtggttttgaaggattgttgctggtggatgatgaccttttaggggtaataggacacagt
aattttagttccatccgggccaccacttgcgtgtacaaagggaagtggctttatgaggtc
ctcatctcatcgcagggtctgatgcagatcggatggtgtacactaagctgcaggtttaac
caggaggaaggtgttggggacactcctgactcttatgcttatgatgggaacagagtgcgc
aaatggaatgtgactactacaaattatggaaagtcctgggctgctggggacattgtcagc
tgtctcatagacctggatgaagggaccatttctttctgcctgaatggcgtatccttaggc
acagcttttagtgacatctcacggggatctgggatggcctactttccagcaattagcctg
tcatttaaggaatctgttgcattcaactttggctctcgcccccttcgttatccagttgaa
gggtaccgccccctgcaggatcctccaaccgcagacttgctgaaatcccagagactgatg
ggttatctaaaaaataccctgagaactggaattgatgtacaggaagggaagctagtggat
aaggacccagccacatggcagctgcaaggggagcctaccattctgattactttggctcac
atattcaaccagtttgctccactcatgtgcaaggtttatcttgtggaggatgtgctaata
aacttccttttggggatccttgaaaaaggtggagcagtggaggaacatcccctcatccag
cacctcctagaccttatgtggttgcttatggaggactatgaaatccacgagtgcctcaaa
cagttaatgatgtcacttcttcgagcttatcgcttctctcctatagtgcctgacctggga
ttgcagattcactacttgcgtctcaccatcgccatacttagacatgaaaagtctcgcaag
tatttgctaagcaatgtgctattcgatgtcctccgttctgttgtgttcttctttattaag
tgccccttgagagtggaggaggcagggctgcaagagctcatccccaccacctggtggcct
aaccgcttcaacaaagaggggaaagaaatcagagatccatcagaggaaagtggagaggaa
cgacttaggaggagagcgtatgaacgaggttgcatgaggttgaaaaaacgtattgaagtg
gtggaagagctgcaggtgcagattttaaggcttctgctgaacaacaaagacaagggaggg
ggtgaagcatcccggtacatttttctgaacaagttcaggaaattcttgcaggaaaatgcc
agcaacagagggaaccccacagtactttgtcctcctgagtacatggtctgctttctgcat
cgcttgatcagtgccctgaggtcctgctgggatgagtacaagataagaaacccactagcc
tgtggcagtgatgaagcctatgtcccccctcagctcttctacaatgggaaggtagactat
tttgacctgcaaaggcttggggggttactgtcgcacctgaggaagactctaaaagatgag
ctagcagctaaggccaatattgtgatagatccctcggagctgcaggcagttacaatggat
gatctagaagaggaagatgaatcggccaatacaactgcacaaaggtccagtgctgctttg
gccattggtggggcacttgctagaccaagctggctcagctccccaacccttgggagagca
aaccgtttcctgagcacggctgctgtgagcctaatgaacccacgacgtccattgggtgct
ctggataaagtcaaggtgcgcagtcttagtgtggaccagcgcacagaggatgacattgaa
ggccaacatggaaatgatgggctgttacttggtagaccaccagaagaagcagatactgta
atcacagaaaattccttgctggagatcctagatggggcagtaatgatgtataacctgagt
gtacatcagcagcttggaaagatggttggagtttcagatgatgtgaatgagtatgcactg
gccctaaaggatacagaagaaaagattaagcgctgtccaaagaggagagcagacattatg
gatgagttggtaaaaagccagcgtgtattctctgagaagctcaatcacctcagcaggcgt
ctggcctggatcaatgtcacaatctattctaaggacaagatgcaagatatatactggctt
cttcaggtgtgtctgcgcagtattgaacatgctgaccgtactggatccctctttgcattc
atgccggaattttacctgaatgtggctatgaacagctataatgctctcaaaaactacttt
agcccagtaagcagtatggaagagcttcaagggtacgaagaaacactaacacgtttggcc
accatcctggccaagcactttgcagatccaagaattgtgggaactgacattaaggactca
ctaatgcaggctcttgcaagctatgtttgttacccccactccctgcgtgcggtggaaagg
atctcggaagagcaacagatcagtatgatgaagaatcttctggctccgtacgagcaaaga
ccatgggctcaaaccaactggatccttgtgagactatggaggggctgtggctttggttac
agatacacacgacttccacacttgctgaaaactaaacccgaggatgccaacctgcccagt
ttgcagaaaccttgtccgtccacactcttgcaaaatcacatggcagaacttcttcgagga
gaccctgaacttgcatcgagtttcttaaacagtgttctgaatcagctaaactgggccttc
tctgaatttattggtatgatccaagagatacagcaagctgctgaacggctggagagaaac
tttgtggatagtcggcagctaaaagtttgtgccacctgctttgacttatctgtcagcctc
ttacgggttctggaaatgacagtcacccttgtacctgacatctttctggactggagtcga
tcatcatctgagctgcttctcaggcgcttggctcagcttctgaatcaggtgctaaatcgt
gtgacagctgagagaaacctatttgacagagtggttaatctccggcttccagggctagaa
agtgtggatcactatccaattctggtggctgtgactggtatcttagttcgactgcttgtt
gatagtagctcccaaggcatccaaagagctacagctgtcctattggcagatccatgtttc
cagctacgctccatccagtacctcttgggtcaggctgaacagtctgttttgggggccggg
cccccttcagctgataagaagcatttttccttgcaggcctacactgattatatcaacgca
gaggaactcggcaaagtgagcaacatgctggcccacctgagcgaggagtccaagcaggcg
gcagctgctactcagccaacaagtgaagaggatctgtgtcccatctgctatgcgcatccc
atctcggctgtgttcaagccatgctcccacaagtcatgcaaggcttgtattaaccagcac
ctcatgaacaacaaagactgcttcttctgcaaagccacaatcactggagtagacgactat
gaaaaaccaactgccaactag
DBGET
integrated database retrieval system
