Xenopus tropicalis (tropical clawed frog): 100380118
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Entry
100380118 CDS
T01011
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100380118 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100380118 (smg6)
03032 DNA replication proteins [BR:
xtr03032
]
100380118 (smg6)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100380118 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
100380118 (smg6)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
100380118 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
100380118
NCBI-ProteinID:
XP_012812911
Xenbase:
XB-GENE-5817473
UniProt:
A0A7D9NM60
LinkDB
All DBs
Position
2:35016429..35163082
Genome browser
AA seq
1384 aa
AA seq
DB search
MAAALERVRISASDLRDILAAGESVRSADSMKEIKEPRVRKGYRRPDIEIYKPGLSRLRN
KPKIDVAGEDDNHFKEYRSEDCTEKQPSMVNGGSVSSVIEDHRKDAGDLAQNGLSCGFSE
DQDRKVTKRTKKPDKQIYQAGRRGHLPVKELMSEATKEDFIRKTEKLKIVDEEEHEKCMT
KDSKPANYALSRDNGNTTNKDEKWRKNEKERTNKAVEDLVMAKTEDDERKIASTKRYSHS
DKRRTRTRTCSTSSAGSNNSSEDALLTDVMKVRQDRTKPVGDRRDKGRLKKQVSLSSTDS
FEEDVSEYFESSLSNRYREKKKHLPGDKGLVAKSSSERRSVSRDNTEKNSHVESSLRASR
NEENNRRRGGRAARPHSSDTGKEQVREKSAEPTGKGRGILILPANTDLSSNSAVEANHNS
TKPLFIPNGNKGLRGRGRGGGNRRLWDPNNPDQKPALKNQSSQLHFLDTDDETSPTSQGE
AYQSLNQPSYYKFQNSDNPYYYPRSPFTYGGFSMPYSVGTSNGMYPGAYYPGFPPQPGQF
ASGPYSGSPLTPEEMEHQVRTLQHQELNRMLRMADNQELQLSNLLSRDGMSTEGLNRMAS
LRSELLQVYERCLLSDIEFSDQHNVDQLLWKNVFYQVIEKFRHFLKETSSDSEEIRRKLL
QVLDEGTAFFDSLLQKLQVTYQFKLEEYMDGMAIRSKPLRKMVKFALISAQRCMICQGDI
ARYREQAADTSNYGKARSWYLKAQQIAPKNGRPYNQLALLAIYTRRKLDAVYYYMRSLAA
SNPILTAKESLMSLFEETKRKADQLEQKQQKERGVSHTSDDTTRSEIWIHPIRRGRESGE
CDALDALSPSDLNKRFLLSFLHAQGKLFTRIGMETFPLVAKKVLKEFQALLQHSPSPIGS
TRMLQLMAINMFAVNNSQSKAGQAEGSCSVVQEQATSLGLSMFSLLVCRCIQLLNVQKKA
HCPRGKGQSMEEEEDDDIKVSSFIPDLKELLPSVKVWSDWMLGHPDTWNPPPNSLADLKE
PALDVWGVLAEFCNALTSVNQSEVPLYKDPDDDLSLLILEEDRLLSGFVPLLAAPQEPCY
VEKTSDKIIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTIGKETGSPEG
NQMEDQDDVVIEEYEEDSEPESSGAEHDFRELRAKKQELARKVEEQKRRQQKIQAVLDGK
TRLLQLEICPLFLVPDTNGFINHLPGLEHLLSCQIYILVIPLIVIHELDGLAKGQEFDQR
NADHARALQEKARKAIQFLEQGFEARDPYLRALTSRGNELDSIAFRSEDISGQKGNNDDL
ILCCCLHYCKDKAKEFMHSRKDEPIRLRREVVLLTDDRNLRVKALTRHVPVRDIPAFLKW
AKVG
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgctggagcgggtgagaatttccgcctccgacttacgggatatcttggca
gctggagagagtgtgaggagcgcagacagtatgaaagagattaaagagcccagagtgaga
aaagggtacaggcgtccagacattgagatctacaaaccagggctgtccaggttgaggaac
aagcctaaaatagatgtggctggagaggatgataaccattttaaagaatacagaagtgaa
gattgtacagagaagcagccctcaatggtaaatggtggaagcgtttcatctgtcattgag
gatcacagaaaagatgccggggatctagcacagaatggcctttcatgtgggttctcagaa
gatcaagatcgaaaagttacaaaaagaaccaagaaaccagacaaacaaatataccaagct
ggaagacgagggcaccttcctgtgaaagaattgatgagtgaagccaccaaagaagacttc
ataagaaaaacagaaaagctaaaaattgtcgatgaggaagagcatgaaaagtgtatgaca
aaagactcaaagccagcaaattatgccttgtctcgggataatgggaacacaaccaacaag
gatgagaaatggaggaagaatgaaaaagagagaactaataaggcagttgaagacttggtc
atggcaaaaactgaagacgatgagaggaagattgcctctaccaaaagatattcccattct
gataaacgcaggactcgcacccgaacctgtagcacaagttctgctggtagtaacaatagc
agtgaagatgctcttctgacagatgtaatgaaggttcgtcaagacaggacaaagccagtt
ggagatcgacgggacaaaggacgcttaaagaaacaggtgtctctttcttcaactgactcc
tttgaggaagatgttagtgaatactttgaaagttctctgtcaaaccgttaccgggaaaaa
aagaagcaccttccaggagacaagggcctggtggccaagagcagtagtgagaggaggtca
gtaagcagggataacacagaaaagaattcacatgtagaatcttcactacgagctagcaga
aatgaagaaaataacaggagaagaggtgggagagctgctcgtccccatagttctgacacg
ggaaaggaacaagttagggagaagtcagctgaaccaacaggcaaaggaaggggcatcctc
atcctacctgccaatacagacttgtcatccaattctgctgtagaagcaaaccacaatagc
acaaagcctctcttcattcccaatggcaacaaagggcttcgtggcagagggcgtggtggt
ggtaatcgccgattatgggacccaaacaaccctgatcagaaacctgctcttaaaaatcaa
agttctcagcttcactttctggataccgatgacgagacttctcctacctcgcagggtgaa
gcttatcagtctcttaaccagccctcatattacaagtttcaaaactctgataacccgtac
tactacccacgctccccatttacctatggtggtttctcaatgccctattctgtgggtact
agtaatggcatgtacccaggtgcatattaccctggatttccaccccagcctgggcaattt
gcttctgggccatattctggtagccccttaactccagaagagatggagcaccaggtgagg
actctgcagcatcaagaacttaatcgtatgcttagaatggccgataaccaggagcttcag
cttagcaaccttctatctcgtgatgggatgagcacagaggggctgaatagaatggcttct
ctaaggtcagagctgttacaggtgtatgaacgctgcctcctatcagatatagaattctct
gaccagcataatgtggatcagttactctggaagaatgtcttctaccaagtcattgaaaag
tttaggcacttcttaaaggagacatcctctgatagtgaagaaatccgccggaaactgctt
caagttttggatgaaggtacagcattctttgacagcctcctgcaaaagctgcaggtcaca
tatcaatttaaattagaggagtatatggatggcatggcaatccgtagtaagcctttgcgt
aaaatggttaagtttgcattgattagtgcacagcgctgtatgatctgtcagggtgacata
gcccgttacagagagcaggcagcagataccagcaactatgggaaagctcgcagctggtac
ctgaaagctcagcagattgcccccaagaatggccgaccttacaatcagctggctctcttg
gctatctatactagacggaaactggatgcagtatattactatatgcgcagtctggctgcc
agcaatcccatactgactgctaaagaaagtctcatgagcttatttgaggagaccaaaagg
aaggctgaccagctggaacaaaagcagcagaaagagagaggagtcagccacacaagtgac
gataccacacgttcagagatctggatccaccccatacgccgagggagggagtccggggaa
tgtgatgctcttgacgctctaagtccaagtgatctgaacaaacgcttcctgctcagcttc
ctgcatgcccaggggaagctcttcaccaggattgggatggaaacatttcccctggtggca
aagaaggtactaaaggagttccaggccttgcttcagcacagcccatccccgatcggcagc
acccgcatgctacagctcatggctattaatatgtttgctgtcaacaattcccagagcaaa
gctggccaagctgagggctcgtgctctgtggtacaagaacaagccacctctctgggtctt
tctatgttttccctgctggtgtgcagatgcattcagctactaaatgtccaaaaaaaagcc
cactgtcctagaggaaaaggacaatctatggaggaggaagaagatgatgatattaaagtg
tcctccttcattcctgatttaaaagagctacttcccagtgtaaaagtgtggtcagactgg
atgctgggccatccggacacatggaaccctccacccaactcactcgctgatctcaaagag
cctgcgctggacgtttggggagtgttggcagagttttgtaacgctttgacctctgtgaac
cagtccgaggtccctctttataaagaccctgatgatgatctttcactccttatcctggaa
gaagatcggcttctctctggctttgtcccactcctggctgcccctcaggagccatgctac
gtggagaagacctcagacaagattattgctgcggattgcaagcgggtcacagtcctgaaa
tatttcctggaagcattgtgcggacaagaagagcctctgctggcattcaagggtggaaaa
tatgtgtcagtggcacccgtcccagacaccataggaaaggaaacaggaagcccagaggga
aaccaaatggaagatcaggatgatgtagtgattgaagagtatgaagaggattcagagccg
gaaagcagcggggcagagcatgatttcagagaacttcgagccaagaaacaggagctagca
agaaaggttgaggagcaaaaacgtcgtcagcagaagattcaggctgtcctggatggaaag
acaagactcctgcaattggaaatctgtcccttgtttcttgtgccggacacaaatggattt
attaaccaccttcctggccttgagcacctcttgtcctgccagatatacatcctggtcata
cctcttatagttatccatgagctagatggccttgcaaagggtcaagagtttgatcagcgc
aatgcagaccatgcacgggcacttcaggagaaagcaagaaaagccattcagttcctggag
caaggttttgaggctcgtgacccctacctgagagcacttactagccgtgggaatgagctg
gactccatcgcttttcgcagtgaagatatctctggacagaagggtaacaatgatgacctt
atactatgctgctgtttacattactgcaaggacaaggcaaaggaattcatgcactcaagg
aaagatgaacccattcgcttaagaagggaagttgttcttcttactgacgaccgcaacctc
agagtaaaggctctgacacggcatgtccctgtccgtgatatcccggcattcctcaagtgg
gccaaagtggggtga
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integrated database retrieval system
