Xenopus tropicalis (tropical clawed frog): 100487523
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Entry
100487523 CDS
T01011
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04020
Calcium signaling pathway
xtr04510
Focal adhesion
xtr04540
Gap junction
xtr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xtr01001
]
100487523 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
100487523 (pdgfrb)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
100487523 (pdgfrb)
Protein kinases [BR:
xtr01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
100487523 (pdgfrb)
CD molecules [BR:
xtr04090
]
Proteins
100487523 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
Herpes_gE_N
VEGFR1-3_N_Ig-like
Motif
Other DBs
NCBI-GeneID:
100487523
NCBI-ProteinID:
XP_012815128
Xenbase:
XB-GENE-6096145
UniProt:
A0A6I8SLH0
LinkDB
All DBs
Position
3:21192172..21264186
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AA seq
1074 aa
AA seq
DB search
MHLLQITAVLLVASRTSSFSITPPEGSEIVLDLYSTYSLYCSSNEELVWEHDGQFIDSAL
EVKDGIFTRKLTLFDVTGLNTGQYSCYFNDSVHTTEPVKKSVYIFVPDPSMVFLPVKESE
EFIFIIHNVENIIPCRVTDPNMTVTLHERKGDTDIPMHYDNKKGFIGVFSDINYYCKASV
NEEEVYTEPFHVYSIQVSTIDMSIEAEKDLVKRGENITVRCIVTNNEILNFTWDYPAKKI
GRTSTPDVIFLPNNSIGSVLTIHNADLDDSGTYSCSAVEMTLDQLDSKNIDITVIEQGFV
NIITNESSISYTIQHKSKLFRINIESYPPPTIVWLKDNITLTGNKTNQITIVDKATSKNR
YTSHLSLVRVKEQDAGLYTIRVFNEDTTQEKSFYLQINVPPEITELVDTHPASGSQIVTC
IAKGIPAPEMTWHICTELKRCNSKDLESWKLLDNKTSDLEFHTNISYIVLEGPGPHTVKS
VLHFKGLEDSITVRCSGKNLLGISYRDATLAPHHLPFKIVLVSAILALVVLVLLLLIILV
VLWQKKPRYEIRWKVIESVSSDGHEYIYVDPLQLPYDSSWELPRDKLVLGRTLGSGAFGR
VVEATAHGLGHAQSVTKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLAACTK
GGPVYIITEYCRYGDLVDYLHRNKHTFLQCYADKSRKDTGVYSNASIGEELHSQLTFSSE
SDGGYMDMTKDDMCYVPMLNQKGEIKYADIETSNYGTTYELENYSTAERTNNVILINESA
TLSYTDLIGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMKDSN
YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNA
IKRGYRMSKPSYASEEVYEIMKKCWDEKFETRPPFSQLVTLTGNLLADTYKQKYKEVDEE
FFRSDHPAVVRVRPRINKINSTMNTGETIANNILYSVVQPNDNNDYIIPLPDPKPEDSDN
IFNESSASRPSSTLQEGNTSSTISCDSPLEQPDQDLEHDPCQECQQQDIEESFL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgcttcagataacagctgtgttactggttgcgagcagaacctctagcttttct
atcacaccgccggaaggctccgagattgtgctcgatctgtatagtacctactccttatat
tgttcctcaaatgaagagcttgtgtgggaacatgatggacagttcatcgattcagcactt
gaggttaaagatggcatcttcacccgaaaacttaccctttttgatgtgacggggctgaac
acagggcagtactcatgctacttcaatgattccgtccataccactgaacctgtgaagaaa
tcggtctatatctttgtaccagatccatctatggtttttctgccagtgaaagagagtgaa
gagtttattttcattattcacaatgttgaaaacatcattccgtgccgagtgacggaccca
aacatgactgtgactctccatgagagaaaaggggatactgacatccctatgcactacgac
aacaagaaaggattcataggggttttcagtgatatcaactactattgcaaagcttcagtt
aatgaggaggaggtttacacagaaccatttcatgtctatagtatacaagtttccacaatc
gacatgtcaattgaagcagagaaggacttggtaaagagaggtgaaaatatcactgttaga
tgcatagtcactaacaatgaaatcctgaactttacttgggattatcctgccaagaagata
ggaaggacaagcaccccggacgtgatatttctgcccaataacagcataggttctgttttg
accatccacaatgctgatctcgatgactctggaacgtacagttgcagcgctgtggagatg
acattggatcaattagactcaaaaaatattgatataactgtaatagaacaaggatttgta
aatataattacgaatgaaagcagcatatcctatactatccagcataaaagcaaattattt
agaatcaacattgagtcctacccaccacccaccattgtctggctaaaagacaacattacc
ctaacaggcaataaaaccaaccaaatcactattgtggacaaagctacatctaaaaacagg
tacacaagtcacttatcccttgtgcgagtgaaagaacaggacgcaggcctctacacaatc
agggtttttaatgaagatacaactcaagagaagtctttctacctccagataaatgtgccc
cctgaaataacagagctggtggatacccaccccgcgagtggcagccaaatagtcacatgt
atagctaaaggaataccagccccagaaatgacatggcacatctgcactgaactcaaaagg
tgtaacagtaaggacctggagtcatggaaacttcttgataacaaaacatcagacctagag
ttccacaccaacatcagttacatagtgctggagggtcccggtcctcacacggtaaaaagt
gtccttcacttcaaaggtctggaagattccatcacagtccgctgctcaggcaaaaacctc
cttgggataagttacagagatgccacactagcaccacaccatttgccctttaagattgtg
cttgtatctgccatcctggcattggtagtgctggttctgcttcttttgattatccttgtc
gtcttgtggcaaaagaaacctcgatatgaaatccgatggaaggtcattgaatcggtcagc
tctgatggccatgaatacatatatgttgaccctttgcagcttccgtacgattctagctgg
gagcttcccagagataagttagtgctaggtcgaacacttggttctggggcatttggcagg
gtggtagaggccacagcccatggattaggccacgcccagtcggtcacaaaagtagctgta
aaaatgctaaaatcaaccgccagaagcagcgagaaacaggctctcatgtctgagctgaag
attatgagccatcttgggccacatctcaatattgtcaacctgctggcagcatgcaccaaa
ggcggacctgtttatatcataactgagtattgtcgttacggagacttagttgattacctg
catcgtaacaagcacacgtttcttcagtgctatgctgataagagcagaaaggacactgga
gtgtacagtaacgcttctattggggaagaactgcacagtcagttgacattttcctctgaa
agcgatggaggctacatggatatgaccaaagatgacatgtgttatgtgccgatgctaaac
caaaaaggagaaatcaaatatgctgatattgaaacttcaaactatggcaccacatatgag
ctggagaattactcaacagcagagaggacaaacaacgtcatcctcataaacgagtcggcg
actctcagttatactgatctgattggattcagctaccaagtggccaacggaatggaattc
cttgcctcaaaaaattgtgttcatcgtgatttggcagcaaggaacgtgcttatctgcgag
ggaaagctggttaagatttgtgactttgggctagccagagacatcatgaaggattccaac
tacatctccaaaggaagcacattcctccctttaaaatggatggcgcctgagagtattttc
aacaatttatacacaacattaagtgacgtgtggtctttcggaattctcctttgggaaatt
ttcactttgggtggaactccataccccgaattaccaatgaatgaacagttctacaatgcc
ataaagcgaggctaccgaatgtcaaagccttcctatgcttcagaggaagtatatgaaatc
atgaaaaaatgctgggatgagaagtttgagacaagaccaccattttctcagctggtgaca
ctcacagggaatcttctggctgacacctacaaacagaaatacaaagaagtggatgaggaa
ttctttagaagcgatcatcctgcggttgtgcgagtgaggcctagaatcaataaaatcaac
agcaccatgaatactggggaaactatagcaaacaatattctgtattcagtggtgcaacca
aatgacaataatgattacattattccactgccggatcccaagcccgaggattctgataac
atatttaatgagagttccgccagtcgtccgagctctacactacaggaaggcaatacttca
tctacgatttcctgtgacagccccttggagcagccagatcaggatttagaacatgaccca
tgtcaagagtgtcaacagcaggacatagaggagagttttctgtag
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